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Structure paper

TitleA guardian residue hinders insertion of a Fapy•dGTP analog by modulating the open-closed DNA polymerase transition.
Journal, issue, pagesNucleic Acids Res., Vol. 47, Page 3197-3207, Year 2019
Publish dateMay 23, 2018 (structure data deposition date)
AuthorsSmith, M.R. / Shock, D.D. / Beard, W.A. / Greenberg, M.M. / Freudenthal, B.D. / Wilson, S.H.
External linksNucleic Acids Res. / PubMed:30649431
MethodsX-ray diffraction
Resolution1.897 - 2.144 Å
Structure data

PDB-6dia:
DNA polymerase beta substrate complex with templating cytosine and incoming Fapy-dGTP analog
Method: X-RAY DIFFRACTION / Resolution: 1.969 Å

PDB-6dic:
D276G DNA polymerase beta substrate complex with templating cytosine and incoming Fapy-dGTP analog
Method: X-RAY DIFFRACTION / Resolution: 1.992 Å

PDB-6mr7:
DNA polymerase beta substrate complex with templating adenine and incoming Fapy-dGTP analog
Method: X-RAY DIFFRACTION / Resolution: 2.144 Å

PDB-6mr8:
D276G DNA polymerase beta substrate complex with templating adenine and incoming Fapy-dGTP analog
Method: X-RAY DIFFRACTION / Resolution: 1.897 Å

Chemicals

ChemComp-GKS:
1-[2-amino-5-(formylamino)-6-oxo-1,6-dihydropyrimidin-4-yl]-2,5-anhydro-1,3-dideoxy-6-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-D-ribo-hexitol

ChemComp-NA:
Unknown entry

ChemComp-CA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-CL:
Unknown entry

ChemComp-EDO:
1,2-ETHANEDIOL

Source
  • homo sapiens (human)
  • synthetic construct (others)
KeywordsDNA BINDING PROTEIN/DNA / Transferase Activity / DNA BINDING PROTEIN / DNA BINDING PROTEIN-DNA complex / DNA Polymerase

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