Database of articles cited by EMDB/PDB/SASBDB data

Keywords
Structure methods	All X-ray diffraction NMR electron microscopy small angle scattering neutron diffraction fiber diffraction powder diffraction infrared spectroscopy EPR fluorescence transfer theoretical model Hybrid
Author
Journal
IF	>30 >20 >10 >5 all

Title	Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation.
Journal, issue, pages	Nucleic Acids Res., Vol. 46, Page 10827-10839, Year 2018
Publish date	Jul 26, 2016 (structure data deposition date)
Authors	Gruber, D.R. / Toner, J.J. / Miears, H.L. / Shernyukov, A.V. / Kiryutin, A.S. / Lomzov, A.A. / Endutkin, A.V. / Grin, I.R. / Petrova, D.V. / Kupryushkin, M.S. ...Gruber, D.R. / Toner, J.J. / Miears, H.L. / Shernyukov, A.V. / Kiryutin, A.S. / Lomzov, A.A. / Endutkin, A.V. / Grin, I.R. / Petrova, D.V. / Kupryushkin, M.S. / Yurkovskaya, A.V. / Johnson, E.C. / Okon, M. / Bagryanskaya, E.G. / Zharkov, D.O. / Smirnov, S.L.
External links	Nucleic Acids Res. / PubMed:30289469
Methods	NMR (solution)
Structure data	PDB-5l06: Solution Structure of a DNA Dodecamer with 5-methylcytosine at the 3rd Position Method: SOLUTION NMR PDB-5l2g: Solution Structure of a DNA Dodecamer with 5-methylcytosine at the 9th Position Method: SOLUTION NMR PDB-5trn: Solution Structure of a DNA Dodecamer with 8-oxoguanine at the 4th position and 5-methylcytosine at the 9th position Method: SOLUTION NMR PDB-5uz1: Solution Structure of a DNA Dodecamer with 5-methylcytosine at the 3rd position and 8-oxoguanine at the 10th position Method: SOLUTION NMR PDB-5uz2: Solution Structure of a DNA Dodecamer with 5-methylcytosine at the 3rd and 9th position and 8-oxoguanine at the 10th position Method: SOLUTION NMR PDB-5uz3: Solution Structure of a DNA Dodecamer with 5-methylcytosine at the 9th position and 8-oxoguanine at the 10th position Method: SOLUTION NMR PDB-6als: Solution structure of a DNA dodecamer with 5-methylcytosine at the 3rd and 9th position and 8-oxoguanine at the 4th position Method: SOLUTION NMR PDB-6alt: Solution structure of a DNA dodecamer with 5-methylcytosine at the 3rd and 9th position Method: SOLUTION NMR PDB-6alu: Solution structure of a DNA dodecamer with 5-methylcytosine at the 3rd and 8-oxoguanine at the 4th position Method: SOLUTION NMR
Source	synthetic construct (others)
Keywords	DNA / Drew-Dickerson / non-canonical / modified DNA / methylated DNA / epigenetics / CpG site / 8-oxoguanine / oxidized DNA / 5-methylcytosine / DNA damage / DNA adduct / lesion