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Structure paper

TitleIdentification, functional characterization, and crystal structure determination of bacterial levoglucosan dehydrogenase.
Journal, issue, pagesJ. Biol. Chem., Vol. 293, Page 17375-17386, Year 2018
Publish dateJun 15, 2018 (structure data deposition date)
AuthorsSugiura, M. / Nakahara, M. / Yamada, C. / Arakawa, T. / Kitaoka, M. / Fushinobu, S.
External linksJ. Biol. Chem. / PubMed:30224354
MethodsX-ray diffraction
Resolution1.8 - 2.41 Å
Structure data

PDB-6a3f:
Levoglucosan dehydrogenase, apo form
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-6a3g:
Levoglucosan dehydrogenase, complex with NADH
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-6a3i:
Levoglucosan dehydrogenase, complex with NADH and levoglucosan
Method: X-RAY DIFFRACTION / Resolution: 2.41 Å

PDB-6a3j:
Levoglucosan dehydrogenase, complex with NADH and L-sorbose
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

Chemicals

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

ChemComp-NAI:
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE

ChemComp-4PW:
Levoglucosan

ChemComp-MES:
2-(N-MORPHOLINO)-ETHANESULFONIC ACID / pH buffer*YM

ChemComp-SOE:
alpha-L-sorbopyranose

Source
  • pseudarthrobacter phenanthrenivorans (strain dsm 18606 / jcm 16027 / lmg 23796 / sphe3) (bacteria)
KeywordsOXIDOREDUCTASE / NADH-dependent dehydrogenase / Rossmann Fold / Gfo/Idh/MocA family

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