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Structure paper

TitleRedox-dependent conformational changes of a proximal [4Fe-4S] cluster in Hyb-type [NiFe]-hydrogenase to protect the active site from O2.
Journal, issue, pagesChem. Commun. (Camb. ), Vol. 54, Page 12385-12388, Year 2018
Publish dateJun 27, 2017 (structure data deposition date)
AuthorsNoor, N.D.M. / Matsuura, H. / Nishikawa, K. / Tai, H. / Hirota, S. / Kim, J. / Kang, J. / Tateno, M. / Yoon, K.S. / Ogo, S. ...Noor, N.D.M. / Matsuura, H. / Nishikawa, K. / Tai, H. / Hirota, S. / Kim, J. / Kang, J. / Tateno, M. / Yoon, K.S. / Ogo, S. / Kubota, S. / Shomura, Y. / Higuchi, Y.
External linksChem. Commun. (Camb. ) / PubMed:30328414
MethodsX-ray diffraction
Resolution1.57 - 2.05 Å
Structure data

PDB-5xvb:
[NiFe]-hydrogenase (Hyb-type) from Citrobacter sp. S-77 in an H2-reduced condition
Method: X-RAY DIFFRACTION / Resolution: 1.84 Å

PDB-5xvc:
[NiFe]-hydrogenase (Hyb-type) from Citrobacter sp. S-77 in a ferricyanide-oxidized condition
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-5xvd:
[NiFe]-hydrogenase (Hyb-type) from Citrobacter sp. S-77 in an air-oxidized condition
Method: X-RAY DIFFRACTION / Resolution: 1.57 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-NFU:
formyl[bis(hydrocyanato-1kappaC)]ironnickel(Fe-Ni)

ChemComp-GOL:
GLYCEROL

ChemComp-SF4:
IRON/SULFUR CLUSTER

ChemComp-F3S:
FE3-S4 CLUSTER

ChemComp-HOH:
WATER

ChemComp-NFV:
NI-FE OXIDIZED ACTIVE CENTER

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-8JU:
FE4-S4-O CLUSTER

ChemComp-NA:
Unknown entry

Source
  • citrobacter sp. s-77 (bacteria)
  • citrobacter sp. mgh106 (bacteria)
KeywordsOXIDOREDUCTASE / [NiFe]-hydrogenase

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