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Structure paper

TitleGalactosylsphingamides: new alpha-GalCer analogues to probe the F'-pocket of CD1d.
Journal, issue, pagesSci Rep, Vol. 7, Page 4276-4276, Year 2017
Publish dateNov 11, 2016 (structure data deposition date)
AuthorsGuillaume, J. / Wang, J. / Janssens, J. / Remesh, S.G. / Risseeuw, M.D.P. / Decruy, T. / Froeyen, M. / Elewaut, D. / Zajonc, D.M. / Calenbergh, S.V.
External linksSci Rep / PubMed:28655912
MethodsX-ray diffraction
Resolution1.75 - 1.85 Å
Structure data

PDB-5tw2:
Structure of mouse CD1d with bound alpha-galactosylsphingamide JG168
Method: X-RAY DIFFRACTION / Resolution: 1.75 Å

PDB-5tw5:
Structure of mouse CD1d with bound glycosphingolipid JJ112
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

Chemicals

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

ChemComp-7LP:
(5R,6S,7S)-5,6-dihydroxy-7-(octanoylamino)-N-(6-phenylhexyl)-8-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]oxy}octanamide

ChemComp-PLM:
PALMITIC ACID

ChemComp-HOH:
WATER

ChemComp-7LM:
N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxy-16-phenylhexadecan-2-yl]octanamide

Source
  • mus musculus (house mouse)
Keywordsimmune system/inhibitor / MHC fold / antigen-presentation / glycolipid / T cells / immune system-inhibitor complex

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