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Structure paper

タイトルPanDDA analysis group deposition of ground-state model
ジャーナル・号・ページTo Be Published
掲載日2018年12月7日 (構造データの登録日)
著者Talon, R. / Krojer, T. / Fairhead, M. / Sethi, R. / Bradley, A.R. / Aimon, A. / Collins, P. / Brandao-Neto, J. / Douangamath, A. / Wright, N. ...Talon, R. / Krojer, T. / Fairhead, M. / Sethi, R. / Bradley, A.R. / Aimon, A. / Collins, P. / Brandao-Neto, J. / Douangamath, A. / Wright, N. / MacLean, E. / Renjie, Z. / Dias, A. / Brennan, P.E. / Bountra, C. / Arrowsmith, C.H. / Edwards, A. / von Delft, F.
リンクPubMedで検索
手法X線回折
解像度1.05 - 2 Å
構造データ

PDB-5qkb:
Ground-state model of NUDT5 and corresponding apo datasets for PanDDA analysis
手法: X-RAY DIFFRACTION / 解像度: 1.58 Å

PDB-5qpc:
Crystal Structure of DCP2 (NUDT20) after initial refinement with no ligand modelled (structure $n)
手法: X-RAY DIFFRACTION / 解像度: 1.66 Å

PDB-5qt3:
Ground state model of human erythroid-specific 5'-aminolevulinate synthase, ALAS2 - SGC Diamond Xchem fragment screening
手法: X-RAY DIFFRACTION / 解像度: 1.95 Å

PDB-5qu9:
PanDDA analysis group deposition of ground-state model of Kalirin/Rac1 screened against a customized urea fragment library by X-ray Crystallography at the XChem facility of Diamond Light Source beamline I04-1
手法: X-RAY DIFFRACTION / 解像度: 2.0 Å

PDB-5r4f:
PanDDA analysis group deposition of ground-state model of ATAD2
手法: X-RAY DIFFRACTION / 解像度: 1.44 Å

PDB-5r4o:
PanDDA analysis group deposition of ground-state model of BROMODOMAIN OF HUMAN NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTF
手法: X-RAY DIFFRACTION / 解像度: 1.05 Å

PDB-5r7w:
PanDDA analysis group deposition of ground-state model of INTERLEUKIN-1 BETA
手法: X-RAY DIFFRACTION / 解像度: 1.27 Å

PDB-5rhy:
PanDDA analysis group deposition of ground-state model of Zika Virus NS3 Helicase
手法: X-RAY DIFFRACTION / 解像度: 1.36 Å

PDB-5rji:
PanDDA analysis group deposition of ground-state model of PHIP
手法: X-RAY DIFFRACTION / 解像度: 1.24 Å

PDB-5rjj:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with NCL-00023833
手法: X-RAY DIFFRACTION / 解像度: 1.151 Å

PDB-5rjk:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with NCL-00024661
手法: X-RAY DIFFRACTION / 解像度: 1.21 Å

PDB-5rjl:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with NCL-00024662
手法: X-RAY DIFFRACTION / 解像度: 1.31 Å

PDB-5rjm:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with NCL-00024671
手法: X-RAY DIFFRACTION / 解像度: 1.407 Å

PDB-5rjn:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with NCL-00024673
手法: X-RAY DIFFRACTION / 解像度: 1.435 Å

PDB-5rjo:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with NCL-00023827
手法: X-RAY DIFFRACTION / 解像度: 1.22 Å

PDB-5rjp:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with NCL-00024672
手法: X-RAY DIFFRACTION / 解像度: 1.242 Å

PDB-5rjq:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with NCL-00024665
手法: X-RAY DIFFRACTION / 解像度: 1.35 Å

PDB-5rjr:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z45705015
手法: X-RAY DIFFRACTION / 解像度: 1.27 Å

PDB-5rjs:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z285642082
手法: X-RAY DIFFRACTION / 解像度: 1.37 Å

PDB-5rjt:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z404993336
手法: X-RAY DIFFRACTION / 解像度: 1.169 Å

PDB-5rju:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z57261895
手法: X-RAY DIFFRACTION / 解像度: 1.32 Å

PDB-5rjv:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z57190020
手法: X-RAY DIFFRACTION / 解像度: 1.45 Å

PDB-5rjw:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z256709556
手法: X-RAY DIFFRACTION / 解像度: 1.514 Å

PDB-5rjx:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z285782452
手法: X-RAY DIFFRACTION / 解像度: 1.291 Å

PDB-5rjy:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z383325512
手法: X-RAY DIFFRACTION / 解像度: 1.25 Å

PDB-5rjz:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z755044716
手法: X-RAY DIFFRACTION / 解像度: 1.275 Å

PDB-5rk0:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z30932204
手法: X-RAY DIFFRACTION / 解像度: 1.24 Å

PDB-5rk1:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z1507502062
手法: X-RAY DIFFRACTION / 解像度: 1.271 Å

PDB-5rk2:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z54633859
手法: X-RAY DIFFRACTION / 解像度: 1.235 Å

PDB-5rk3:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z1501469697
手法: X-RAY DIFFRACTION / 解像度: 1.31 Å

PDB-5rk4:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z56791867
手法: X-RAY DIFFRACTION / 解像度: 1.284 Å

PDB-5rk5:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z57478994
手法: X-RAY DIFFRACTION / 解像度: 1.243 Å

PDB-5rk6:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z198194394
手法: X-RAY DIFFRACTION / 解像度: 1.241 Å

PDB-5rk7:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z31721097
手法: X-RAY DIFFRACTION / 解像度: 1.304 Å

PDB-5rk8:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z53116498
手法: X-RAY DIFFRACTION / 解像度: 1.272 Å

PDB-5rk9:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z461898648
手法: X-RAY DIFFRACTION / 解像度: 1.48 Å

PDB-5rka:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z126932614
手法: X-RAY DIFFRACTION / 解像度: 1.33 Å

PDB-5rkb:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z2004563941
手法: X-RAY DIFFRACTION / 解像度: 1.279 Å

PDB-5rkc:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z234898257
手法: X-RAY DIFFRACTION / 解像度: 1.24 Å

PDB-5rkd:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z2168282707
手法: X-RAY DIFFRACTION / 解像度: 1.237 Å

PDB-5rke:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z906021418
手法: X-RAY DIFFRACTION / 解像度: 1.291 Å

PDB-5rkf:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z1674937530
手法: X-RAY DIFFRACTION / 解像度: 1.264 Å

PDB-5rkg:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z1124201124
手法: X-RAY DIFFRACTION / 解像度: 1.282 Å

PDB-5rkh:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z31432917
手法: X-RAY DIFFRACTION / 解像度: 1.252 Å

PDB-5rki:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z198194396
手法: X-RAY DIFFRACTION / 解像度: 1.268 Å

PDB-5rkj:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z373768898
手法: X-RAY DIFFRACTION / 解像度: 1.46 Å

PDB-5rkk:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z275181224
手法: X-RAY DIFFRACTION / 解像度: 1.43 Å

PDB-5rkl:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z1545196403
手法: X-RAY DIFFRACTION / 解像度: 1.36 Å

PDB-5rkm:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z2017168803
手法: X-RAY DIFFRACTION / 解像度: 1.28 Å

PDB-5rkn:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z373768900
手法: X-RAY DIFFRACTION / 解像度: 1.23 Å

PDB-5rko:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z30620520
手法: X-RAY DIFFRACTION / 解像度: 1.42 Å

PDB-5rkp:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z1079512010
手法: X-RAY DIFFRACTION / 解像度: 1.35 Å

PDB-5rkq:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z1545196101
手法: X-RAY DIFFRACTION / 解像度: 1.3 Å

PDB-5rkr:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z1432018343
手法: X-RAY DIFFRACTION / 解像度: 1.37 Å

PDB-5rks:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z1696844792
手法: X-RAY DIFFRACTION / 解像度: 1.24 Å

PDB-5rkt:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z1266933824
手法: X-RAY DIFFRACTION / 解像度: 1.241 Å

PDB-5rku:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z32367954
手法: X-RAY DIFFRACTION / 解像度: 1.4 Å

PDB-5rkv:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z56877838
手法: X-RAY DIFFRACTION / 解像度: 1.277 Å

PDB-5rkw:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z27678561
手法: X-RAY DIFFRACTION / 解像度: 1.242 Å

PDB-5rkx:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z1324080698
手法: X-RAY DIFFRACTION / 解像度: 1.24 Å

PDB-5rky:
PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z1796014543
手法: X-RAY DIFFRACTION / 解像度: 1.38 Å

PDB-5rkz:
PanDDA analysis group deposition of ground-state model of human NUDT22 screened against the DSPL fragment library by X-ray Crystallography
手法: X-RAY DIFFRACTION / 解像度: 1.38 Å

PDB-5rob:
PanDDA analysis group deposition of ground-state model of SARS-CoV-2 helicase
手法: X-RAY DIFFRACTION / 解像度: 1.87 Å

PDB-5rw1:
PanDDA analysis group deposition of ground-state model of DHTKD1
手法: X-RAY DIFFRACTION / 解像度: 1.52 Å

PDB-5sds:
PanDDA analysis group deposition of ground-state model of Porphyromonas gingivalis DPP11
手法: X-RAY DIFFRACTION / 解像度: 1.91 Å

PDB-5smk:
PanDDA analysis group deposition of ground-state model of SARS-CoV-2 NSP14
手法: X-RAY DIFFRACTION / 解像度: 1.65 Å

PDB-7gtw:
PanDDA analysis group deposition of ground-state model of PTP1B, using pre-clustering, cluster1
手法: X-RAY DIFFRACTION / 解像度: 1.51 Å

PDB-7gtx:
PanDDA analysis group deposition of ground-state model of PTP1B, using pre-clustering, cluster2
手法: X-RAY DIFFRACTION / 解像度: 1.51 Å

PDB-7gty:
PanDDA analysis group deposition of ground-state model of PTP1B, using pre-clustering, cluster3
手法: X-RAY DIFFRACTION / 解像度: 1.54 Å

PDB-7gtz:
PanDDA analysis group deposition of ground-state model of PTP1B, using pre-clustering, cluster5
手法: X-RAY DIFFRACTION / 解像度: 1.6 Å

PDB-7gu0:
PanDDA analysis group deposition of ground-state model of PTP1B, using pre-clustering, cluster6
手法: X-RAY DIFFRACTION / 解像度: 1.66 Å

PDB-7gu1:
PanDDA analysis group deposition of ground-state model of PTP1B, using pre-clustering, cluster7
手法: X-RAY DIFFRACTION / 解像度: 1.59 Å

PDB-7gu2:
PanDDA analysis group deposition of ground-state model of PTP1B, using pre-clustering, cluster8
手法: X-RAY DIFFRACTION / 解像度: 1.8 Å

PDB-7gu3:
PanDDA analysis group deposition of ground-state model of PTP1B, using pre-clustering, cluster9
手法: X-RAY DIFFRACTION / 解像度: 1.74 Å

PDB-7gu4:
PanDDA analysis group deposition of ground-state model of PTP1B, using pre-clustering, cluster11
手法: X-RAY DIFFRACTION / 解像度: 1.59 Å

PDB-7gu5:
PanDDA analysis group deposition of ground-state model of PTP1B, using pre-clustering, cluster12
手法: X-RAY DIFFRACTION / 解像度: 1.52 Å

PDB-7gu6:
PanDDA analysis group deposition of ground-state model of PTP1B, using pre-clustering, cluster14
手法: X-RAY DIFFRACTION / 解像度: 1.56 Å

PDB-7gu7:
PanDDA analysis group deposition of ground-state model of PTP1B, using pre-clustering, cluster15
手法: X-RAY DIFFRACTION / 解像度: 1.7 Å

PDB-7gu8:
PanDDA analysis group deposition of ground-state model of PTP1B, using pre-clustering, cluster16
手法: X-RAY DIFFRACTION / 解像度: 1.59 Å

PDB-7gu9:
PanDDA analysis group deposition of ground-state model of PTP1B, using pre-clustering, cluster17
手法: X-RAY DIFFRACTION / 解像度: 1.53 Å

PDB-7gua:
PanDDA analysis group deposition of ground-state model of PTP1B, using pre-clustering, cluster18
手法: X-RAY DIFFRACTION / 解像度: 1.63 Å

PDB-7gub:
PanDDA analysis group deposition of ground-state model of PTP1B, using pre-clustering, cluster19
手法: X-RAY DIFFRACTION / 解像度: 1.94 Å

PDB-7guc:
PanDDA analysis group deposition of ground-state model of PTP1B, using pre-clustering, cluster20
手法: X-RAY DIFFRACTION / 解像度: 1.78 Å

化合物

ChemComp-MG:
Unknown entry / マグネシウムジカチオン

ChemComp-CL:
Unknown entry / クロリド / 塩化物

ChemComp-EDO:
1,2-ETHANEDIOL / エチレングリコ-ル / エチレングリコール

ChemComp-HOH:
WATER /

ChemComp-DMS:
DIMETHYL SULFOXIDE / 2-チアプロパン2-オキシド / DMSO, 沈殿剤*YM / ジメチルスルホキシド

ChemComp-ACT:
ACETATE ION / 酢酸イオン / 酢酸塩

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER / ジエチレングリコ-ル / ジエチレングリコール

ChemComp-PLP:
PYRIDOXAL-5'-PHOSPHATE / ピリドキサ-ル5′-りん酸 / ピリドキサールリン酸

ChemComp-SO4:
SULFATE ION / 硫酸ジアニオン / 硫酸塩

ChemComp-TRS:
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / トリス(ヒドロキシメチル)メチルアンモニウム / pH緩衝剤*YM / トリスヒドロキシメチルアミノメタン

ChemComp-PO4:
PHOSPHATE ION / ホスファ-ト / リン酸塩

ChemComp-MPD:
(4S)-2-METHYL-2,4-PENTANEDIOL / (S)-2-メチル-2,4-ペンタンジオ-ル / 沈殿剤*YM / 2-Methyl-2,4-pentanediol

ChemComp-HH8:
4-bromanyl-1,8-naphthyridine

ChemComp-UUJ:
5-bromo-2-hydroxybenzonitrile / 5-ブロモ-2-ヒドロキシベンゾニトリル

ChemComp-UUG:
(4-bromo-2-methoxyphenyl)methanol / 2-メトキシ-4-ブロモベンジルアルコ-ル

ChemComp-UU1:
2-(4-bromo-1H-pyrazol-1-yl)ethan-1-ol

ChemComp-UUV:
4-bromo-1-(2-methoxyethyl)-1H-pyrazole

ChemComp-1P8:
6-bromo-1,3-dihydro-2H-indol-2-one / 6-ブロモインドリン-2-オン

ChemComp-UUS:
4-bromo-1-(2-hydroxyethyl)pyridin-2(1H)-one

ChemComp-HHT:
2-(4-bromanyl-2-methoxy-phenyl)ethanoic acid

ChemComp-S9S:
~{N}-[2-(4-fluorophenyl)ethyl]methanesulfonamide

ChemComp-UUP:
N-cyclopropylpyrazolo[1,5-a]pyrimidine-3-carboxamide

ChemComp-UUM:
5-methyl-N-(1-methyl-1H-pyrazol-4-yl)-1,2-oxazole-3-carboxamide

ChemComp-O2D:
2-cyclohexyl-N-(4H-1,2,4-triazol-4-yl)acetamide

ChemComp-UVD:
methyl {4-[(pyridin-4-yl)methyl]phenyl}carbamate

ChemComp-60P:
3-methylthiophene-2-carboxylic acid / 3-メチルチオフェン-2-カルボン酸

ChemComp-UVA:
N-methyl-2-(methylsulfonyl)aniline

ChemComp-UV7:
N-[(1H-pyrazol-4-yl)methyl]acetamide

ChemComp-K0J:
N-ethyl-1H-1,2,3-triazole-4-carboxamide

ChemComp-T0S:
N-[(4-sulfamoylphenyl)methyl]acetamide / N-(4-スルファモイルベンジル)アセトアミド

ChemComp-UV1:
6-methoxy-1,3,4,5-tetrahydro-2H-1-benzazepin-2-one / 6-メトキシ-1,3,4,5-テトラヒドロ-2H-1-ベンゾアゼピン-2-オン

ChemComp-UUY:
2-[methyl(pyridin-2-yl)amino]ethan-1-ol / 2-(メチル2-ピリジニルアミノ)エタノ-ル

ChemComp-UVV:
3-amino-1,6-dimethylpyridin-2(1H)-one

ChemComp-K1S:
N,N-diethyl-5-methyl[1,2,4]triazolo[1,5-a]pyrimidin-7-amine / トラピジル / アンタゴニスト*YM / Trapidil

ChemComp-UVS:
5-(methoxymethyl)-1,3,4-thiadiazol-2-amine

ChemComp-O1M:
4-(4-fluorophenyl)piperazine-1-carboxamide

ChemComp-UVM:
ethyl morpholine-4-carboxylate / モルホリン-4-カルボン酸エチル

ChemComp-UVJ:
3-(2-methyl-1H-benzimidazol-1-yl)propanamide

ChemComp-UVG:
N,N-dimethyl-1H-pyrazole-4-carboxamide

ChemComp-T6J:
2-[(methylsulfonyl)methyl]-1H-benzimidazole / 2-(メチルスルホニルメチル)-1H-ベンゾイミダゾ-ル

ChemComp-UWG:
(1S)-1-(1-cyclopentyl-1H-pyrazol-4-yl)ethan-1-ol

ChemComp-UWD:
N-methyl-1-([1,2,4]triazolo[4,3-a]pyridin-3-yl)methanamine

ChemComp-UW7:
(6S)-1-methyl-4,5,6,7-tetrahydro-1H-benzotriazole-6-carboxylic acid

ChemComp-K2G:
5-chloro-2-(propan-2-yl)pyrimidine-4-carboxamide

ChemComp-UVY:
2-(1-ethyl-1H-pyrazol-4-yl)ethan-1-ol

ChemComp-GOJ:
ethyl 1~{H}-pyrazole-4-carboxylate / 1H-ピラゾ-ル-4-カルボン酸エチル

ChemComp-LPZ:
2-(4-methylphenoxy)-1-(4-methylpiperazin-4-ium-1-yl)ethanone

ChemComp-K2M:
4-(furan-2-carbonyl)piperazine-1-carboxamide

ChemComp-UWY:
N-(1-ethyl-1H-pyrazol-4-yl)cyclopentanecarboxamide

ChemComp-K0P:
N-[(1-ethyl-1H-pyrazol-4-yl)methyl]pyridine-3-carboxamide

ChemComp-UWV:
2-fluoro-N-[(1H-pyrazol-3-yl)methyl]aniline

ChemComp-O0V:
(2S)-2-[(3-fluoropyridin-2-yl)(methyl)amino]propan-1-ol

ChemComp-NUA:
N-(1-ethyl-1H-pyrazol-4-yl)cyclobutanecarboxamide

ChemComp-GX4:
cyclopropyl-[4-(4-fluorophenyl)piperazin-1-yl]methanone

ChemComp-UWS:
6-methyl-2-[(3-methyl-1,2-oxazol-5-yl)methyl]pyridazin-3(2H)-one

ChemComp-UXJ:
2-fluoro-N-[(3-methyl-1H-pyrazol-4-yl)methyl]aniline

ChemComp-O0G:
(2S)-2-[(5-chloro-3-fluoropyridin-2-yl)amino]propan-1-ol

ChemComp-UXG:
1-(diphenylmethyl)azetidin-3-ol / 1-ベンズヒドリルアゼチジン-3-オ-ル

ChemComp-UXD:
(1H-pyrazol-4-yl)(pyrrolidin-1-yl)methanone

ChemComp-UXA:
~{N}-cyclopropyl-1,3-benzodioxole-5-carboxamide

ChemComp-YI6:
2-(4-ethoxyphenyl)ethanoic acid / 4-エトキシフェニル酢酸

ChemComp-UX7:
N-(6-methoxy-1,3-benzothiazol-2-yl)cyclopropanecarboxamide

ChemComp-UR1:
3-fluoro-5-methylbenzene-1-sulfonamide

ChemComp-UX1:
1-[(2-fluorophenyl)methyl]-N-methylcyclopropane-1-carboxamide

ChemComp-ZN:
Unknown entry

由来
  • homo sapiens (ヒト)
  • zika virus (ジカ熱ウイルス)
  • severe acute respiratory syndrome coronavirus 2 (SARSコロナウイルス2)
  • porphyromonas gingivalis (ポルフィロモナス・ジンジバリス)
キーワードSGC - Diamond I04-1 fragment screening / PanDDA / XChemExplorer / NUDT5 / HYDROLASE (加水分解酵素) / TRANSFERASE (転移酵素) / HYDROLASE/TRANSFERASE / HYDROLASE-TRANSFERASE complex / TRANSCRIPTION (転写 (生物学)) / BROMODOMAIN (ブロモドメイン) / BPTF / FALZ / FAC1 / BROMODOMAIN AND PHD FINGER-CONTAINING TRANSCRIPTION FACTOR / FETAL ALZ-50 CLONE 1 PROTEIN / SIGNALING PROTEIN / IL-1 BETA / VIRAL PROTEIN (ウイルスタンパク質) / PROTEIN BINDING (タンパク質) / Fragment-based drug design / SAMPL7 / NUDIX domain / NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X MOTIF 22 / OXIDOREDUCTASE (酸化還元酵素) / Diamond I04-1 fragment screening / peptidase (プロテアーゼ) / Porphyromonas gingivalis (ポルフィロモナス・ジンジバリス) / protein tyrosine phosphatase (プロテインチロシンホスファターゼ) / PTP / protein tyrosine phosphatase 1B / PTP1B / enzyme (酵素) / allostery (アロステリック効果) / multiconformer

+
万見文献について

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お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月:コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか? / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例:em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見文献

EMDB/PDB/SASBDBから引用されている文献のデータベース

  • EMDB/PDB/SASBDBのエントリから引用されている文献のデータベースです
  • Pubmedのデータを利用しています

関連情報:EMDB / PDB / SASBDB / 万見 (Yorodumi) / EMN文献 / 新しいEM Navigatorと万見の変更点

他の情報も見る