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Structure paper

Title5'-Phosphorothiolate Dinucleotide Cap Analogues: Reagents for Messenger RNA Modification and Potent Small-Molecular Inhibitors of Decapping Enzymes.
Journal, issue, pagesJ. Am. Chem. Soc., Vol. 140, Page 5987-5999, Year 2018
Publish dateAug 18, 2017 (structure data deposition date)
AuthorsWojtczak, B.A. / Sikorski, P.J. / Fac-Dabrowska, K. / Nowicka, A. / Warminski, M. / Kubacka, D. / Nowak, E. / Nowotny, M. / Kowalska, J. / Jemielity, J.
External linksJ. Am. Chem. Soc. / PubMed:29676910
MethodsX-ray diffraction
Resolution1.92 - 2.06 Å
Structure data

PDB-5osx:
Translation initiation factor 4E in complex with m7G(5'S)ppp(5'S)G mRNA 5' cap analog
Method: X-RAY DIFFRACTION / Resolution: 1.92 Å

PDB-5osy:
Human Decapping Scavenger enzyme (hDcpS) in complex with m7G(5'S)ppSp(5'S)G mRNA 5' cap analog
Method: X-RAY DIFFRACTION / Resolution: 2.06 Å

Chemicals

ChemComp-AKW:
[(2~{S},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-3~{H}-purin-7-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl-[[[(3~{R},4~{S})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-phosphinic acid

ChemComp-K:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-AJQ:
[(2~{S},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1~{H}-purin-7-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl-[[[(2~{S},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl-oxidanyl-phosphoryl]oxy-sulfanyl-phosphoryl]oxy-phosphinic acid

ChemComp-GOL:
GLYCEROL

Source
  • mus musculus (house mouse)
  • homo sapiens (human)
KeywordsTRANSLATION / Protein-ligand complex / translation initiation factor / eIF4E / m7G(5'S)ppp(5'S)G / phosphorothiolate / mRNA 5' cap analog / HYDROLASE / decapping / DcpS / m7G(5'S)ppSp(5'S)G / mRNA turnover

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