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Structure paper

TitleGliotoxin Biosynthesis: Structure, Mechanism, and Metal Promiscuity of Carboxypeptidase GliJ.
Journal, issue, pagesACS Chem. Biol., Vol. 12, Page 1874-1882, Year 2017
Publish dateSep 19, 2016 (structure data deposition date)
AuthorsMarion, A. / Groll, M. / Scharf, D.H. / Scherlach, K. / Glaser, M. / Sievers, H. / Schuster, M. / Hertweck, C. / Brakhage, A.A. / Antes, I. / Huber, E.M.
External linksACS Chem. Biol. / PubMed:28525266
MethodsX-ray diffraction
Resolution1.85 - 2.7 Å
Structure data

PDB-5lwz:
Cys-Gly dipeptidase GliJ (space group C2)
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-5lx0:
Cys-Gly dipeptidase GliJ (space group P3221)
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-5lx1:
Cys-Gly dipeptidase GliJ mutant D304A
Method: X-RAY DIFFRACTION / Resolution: 2.7 Å

PDB-5lx4:
Cys-Gly dipeptidase GliJ mutant D38H
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-5lx7:
Cys-Gly dipeptidase GliJ mutant D38N
Method: X-RAY DIFFRACTION / Resolution: 1.95 Å

PDB-5nrt:
Cys-Gly dipeptidase GliJ in complex with Ca2+
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-5nru:
Cys-Gly dipeptidase GliJ in complex with Zn2+
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-5nrx:
Cys-Gly dipeptidase GliJ in complex with Fe2+
Method: X-RAY DIFFRACTION / Resolution: 2.35 Å

PDB-5nry:
Cys-Gly dipeptidase GliJ in complex with Fe3+
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-5nrz:
Cys-Gly dipeptidase GliJ in complex with Mn2+
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-5ns1:
Cys-Gly dipeptidase GliJ in complex with Ni2+
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-5ns2:
Cys-Gly dipeptidase GliJ in complex with Co2+
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-5ns5:
Cys-Gly dipeptidase GliJ in complex with Cu2+ and Zn2+
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

Chemicals

ChemComp-FE:
Unknown entry

ChemComp-GOL:
GLYCEROL

ChemComp-HOH:
WATER

ChemComp-TRS:
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM

ChemComp-CA:
Unknown entry

ChemComp-MG:
Unknown entry

ChemComp-ZN:
Unknown entry

ChemComp-CL:
Unknown entry

ChemComp-MN:
Unknown entry

ChemComp-NI:
NICKEL (II) ION

ChemComp-CO:
Unknown entry

ChemComp-CU:
COPPER (II) ION

Source
  • neosartorya fumigata (strain atcc mya-4609 / af293 / cbs 101355 / fgsc a1100) (mold)
  • aspergillus fumigatus (mold)
  • neosartorya fumigata (mold)
  • aspergillus fumigatus af293 (mold)
KeywordsHYDROLASE / carboxypeptidase / dipeptidase / gliotoxin biosynthesis

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