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Structure paper

TitleStructures of KdnB and KdnA from Shewanella oneidensis: Key Enzymes in the Formation of 8-Amino-3,8-Dideoxy-d-Manno-Octulosonic Acid.
Journal, issue, pagesBiochemistry, Vol. 55, Page 4485-4494, Year 2016
Publish dateMay 28, 2016 (structure data deposition date)
AuthorsZachman-Brockmeyer, T.R. / Thoden, J.B. / Holden, H.M.
External linksBiochemistry / PubMed:27275764
MethodsX-ray diffraction
Resolution1.85 - 2.15 Å
Structure data

PDB-5k8b:
X-ray structure of KdnA, 8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase, from Shewanella oneidensis in the presence of the external aldimine with PLP and glutamate
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-5k8c:
X-ray structure of KdnB, 3-deoxy-alpha-D-manno-octulosonate 8-oxidase, from Shewanella oneidensis
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

Chemicals

ChemComp-PDG:
N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-D-GLUTAMIC ACID

ChemComp-CL:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-NAD:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE / NAD*YM

ChemComp-PO4:
PHOSPHATE ION

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-ZN:
Unknown entry

Source
  • shewanella oneidensis (strain mr-1) (bacteria)
KeywordsTRANSFERASE / Transaminase / 8-amino-3 / 8-dideoxy-d-manno-octulosonic acid / deoxy sugar / Group III alcohol dehydrogenase

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