PDB-5hbl: Native rhodanese domain of YgaP prepared with 1mM DDT is S-nitrosylated Method: X-RAY DIFFRACTION / Resolution: 1.617 Å
PDB-5hbo: Native rhodanese domain of YgaP prepared without DDT is both S-nitrosylated and S-sulfhydrated Method: X-RAY DIFFRACTION / Resolution: 1.66 Å
PDB-5hbp: The crystal of rhodanese domain of YgaP treated with SNOC Method: X-RAY DIFFRACTION / Resolution: 1.5 Å
PDB-5hbq: C63D mutant of the rhodanese domain of YgaP Method: X-RAY DIFFRACTION / Resolution: 1.66 Å
PDB-5lam: Refined 3D NMR structure of the cytoplasmic rhodanese domain of the inner membrane protein YgaP from Escherichia coli Method: SOLUTION NMR
PDB-5lao: S-nitrosylated 3D NMR structure of the cytoplasmic rhodanese domain of the inner membrane protein YgaP from Escherichia coli Method: SOLUTION NMR
In the structure databanks used in Yorodumi, some data are registered as the other names, "COVID-19 virus" and "2019-nCoV". Here are the details of the virus and the list of structure data.
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)
EMDB accession codes are about to change! (news from PDBe EMDB page)
The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
The EM Navigator/Yorodumi systems omit the EMD- prefix.
Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator