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Structure paper

TitleCarbon-sulfur bond-forming reaction catalysed by the radical SAM enzyme HydE.
Journal, issue, pagesNat. Chem., Vol. 8, Page 491-500, Year 2016
Publish dateDec 17, 2015 (structure data deposition date)
AuthorsRohac, R. / Amara, P. / Benjdia, A. / Martin, L. / Ruffie, P. / Favier, A. / Berteau, O. / Mouesca, J.M. / Fontecilla-Camps, J.C. / Nicolet, Y.
External linksNat. Chem. / PubMed:27102684
MethodsX-ray diffraction
Resolution1.17 - 1.49 Å
Structure data

PDB-5fep:
HydE from T. maritima in complex with (2R,4R)-MeTDA
Method: X-RAY DIFFRACTION / Resolution: 1.45 Å

PDB-5fes:
HydE from T. maritima in complex with (2R,4R)-MeSeTDA
Method: X-RAY DIFFRACTION / Resolution: 1.27 Å

PDB-5few:
HydE from T. maritima in complex with S-adenosyl-L-cysteine (final product)
Method: X-RAY DIFFRACTION / Resolution: 1.17 Å

PDB-5fex:
HydE from T. maritima in complex with Se-adenosyl-L-selenocysteine (tfinal of the reaction)
Method: X-RAY DIFFRACTION / Resolution: 1.32 Å

PDB-5fez:
HydE from T. maritima in complex with (2R,4R)-MeSeTDA, 5'-deoxyadenosine and methionine
Method: X-RAY DIFFRACTION / Resolution: 1.35 Å

PDB-5ff0:
HydE from T. maritima in complex with S-adenosyl-L-cysteine and methionine
Method: X-RAY DIFFRACTION / Resolution: 1.49 Å

PDB-5ff2:
HydE from T. maritima in complex with (2R,4R)-TDA
Method: X-RAY DIFFRACTION / Resolution: 1.47 Å

PDB-5ff3:
HydE from T. maritima in complex with 4R-TCA
Method: X-RAY DIFFRACTION / Resolution: 1.18 Å

PDB-5ff4:
HydE from T. maritima in complex with (2R,4R)-TMeTDA
Method: X-RAY DIFFRACTION / Resolution: 1.35 Å

Chemicals

ChemComp-SF4:
IRON/SULFUR CLUSTER

ChemComp-CPS:
3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE / detergent*YM

ChemComp-SAM:
S-ADENOSYLMETHIONINE

ChemComp-CL:
Unknown entry

ChemComp-41K:
(2R,4R)-2-methyl-1,3-thiazolidine-2,4-dicarboxylic acid

ChemComp-HOH:
WATER

ChemComp-9SE:
(2~{R},4~{R})-2-methyl-1,3-selenazolidine-2,4-dicarboxylic acid

ChemComp-MET:
METHIONINE

ChemComp-5X8:
S-adenosyl-L-cysteine

ChemComp-SAH:
S-ADENOSYL-L-HOMOCYSTEINE

ChemComp-5AD:
5'-DEOXYADENOSINE

ChemComp-SEC:
SELENOCYSTEINE

ChemComp-SFS:
Fe4-Se4 cluster

ChemComp-5XB:
(2~{R},4~{R})-1,3-thiazolidine-2,4-dicarboxylic acid

ChemComp-H2S:
HYDROSULFURIC ACID

ChemComp-FES:
FE2/S2 (INORGANIC) CLUSTER

ChemComp-PRS:
THIOPROLINE

ChemComp-5ZZ:
(2~{R},4~{R})-2,5,5-trimethyl-1,3-thiazolidine-2,4-dicarboxylic acid

ChemComp-SE:
SELENIUM ATOM

Source
  • thermotoga maritima (bacteria)
  • thermotoga maritima (strain atcc 43589 / msb8 / dsm 3109 / jcm 10099) (bacteria)
KeywordsOXIDOREDUCTASE / Radical SAM enzyme / complex / FeFe-hydrogenase maturase / thiazolidine / thazolidine

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