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Structure paper

TitleA Conserved Pocket in the Dengue Virus Polymerase Identified through Fragment-based Screening.
Journal, issue, pagesJ. Biol. Chem., Vol. 291, Page 8541-8548, Year 2016
Publish dateDec 3, 2015 (structure data deposition date)
AuthorsNoble, C.G. / Lim, S.P. / Arora, R. / Yokokawa, F. / Nilar, S. / Seh, C.C. / Wright, S.K. / Benson, T.E. / Smith, P.W. / Shi, P.Y.
External linksJ. Biol. Chem. / PubMed:26872970
MethodsX-ray diffraction
Resolution2 - 2.05 Å
Structure data

PDB-5f3t:
Dengue serotype 3 RNA-dependent RNA polymerase bound to JF-31-MG46
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-5f3z:
Dengue serotype 3 RNA-dependent RNA polymerase bound to PC-79-SH52
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-5f41:
DENGUE SEROTYPE 3 RNA-DEPENDENT RNA POLYMERASE BOUND TO FD-83-KI26
Method: X-RAY DIFFRACTION / Resolution: 2 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-5UH:
2-(4-methoxy-3-phenyl-phenyl)ethanoic acid

ChemComp-HOH:
WATER

ChemComp-5V5:
2-(4-methoxy-3-thiophen-2-yl-phenyl)ethanoic acid

ChemComp-5V6:
2-(4-methoxy-3-thiophen-3-yl-phenyl)ethanoic acid

Source
  • dengue virus 3
KeywordsTRANSFERASE / RNA-dependent RNA polymerase / RdRp Inhibitor / Dengue / Inhibitor RdRp / Dengue virus

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