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Structure paper

TitleStructural Framework for Metal Incorporation during Molybdenum Cofactor Biosynthesis.
Journal, issue, pagesStructure, Vol. 24, Page 782-788, Year 2016
Publish dateNov 15, 2015 (structure data deposition date)
AuthorsKasaragod, V.B. / Schindelin, H.
External linksStructure / PubMed:27112598
MethodsX-ray diffraction
Resolution1.55 - 2 Å
Structure data

PDB-5erq:
Gephyrin E domain at 1.55 angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 1.55 Å

PDB-5err:
GephE in complex with Mg(2+) - ADP
Method: X-RAY DIFFRACTION / Resolution: 1.65 Å

PDB-5ers:
GephE in complex with Mg(2+) - AMP
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-5ert:
GephE in complex with Mn(2+) - ADP
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-5eru:
Ternary complex of GephE - ADP - Molybdenum cluster
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-5erv:
Ternary complex of GephE - ADP - Tungsten cluster
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

Chemicals

ChemComp-ACT:
ACETATE ION

ChemComp-MPD:
(4S)-2-METHYL-2,4-PENTANEDIOL / precipitant*YM

ChemComp-HOH:
WATER

ChemComp-ADP:
ADENOSINE-5'-DIPHOSPHATE / ADP, energy-carrying molecule*YM

ChemComp-MG:
Unknown entry

ChemComp-PO4:
PHOSPHATE ION

ChemComp-AMP:
ADENOSINE MONOPHOSPHATE / AMP*YM

ChemComp-MN:
Unknown entry

ChemComp-CA:
Unknown entry

ChemComp-MO:
MOLYBDENUM ATOM

ChemComp-MOO:
MOLYBDATE ION

ChemComp-W:
Unknown entry

ChemComp-WO4:
TUNGSTATE(VI)ION

Source
  • rattus norvegicus (Norway rat)
KeywordsTRANSFERASE / Molybdenum cofactor / tungsten cofactor / Moco biosynthesis / molybdenum and tungsten cofactor / Moco / Wco / terminal step / Moco and Wco biosynthesis / AMP with Mg / Moco biosyntheis / ADP complex / Manganese / Molybdenum cluster / ternary complex / Tungsten cluster / Biosynthesis

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