Database of articles cited by EMDB/PDB/SASBDB data

Keywords
Structure methods	All X-ray diffraction NMR electron microscopy small angle scattering neutron diffraction fiber diffraction powder diffraction infrared spectroscopy EPR fluorescence transfer theoretical model Hybrid
Author
Journal
IF	>30 >20 >10 >5 all

Title	Histone deacetylase 6 structure and molecular basis of catalysis and inhibition.
Journal, issue, pages	Nat. Chem. Biol., Vol. 12, Page 741-747, Year 2016
Publish date	Oct 22, 2015 (structure data deposition date)
Authors	Hai, Y. / Christianson, D.W.
External links	Nat. Chem. Biol. / PubMed:27454933
Methods	X-ray diffraction
Resolution	1.32 - 2.79 Å
Structure data	PDB-5edu: Crystal structure of human histone deacetylase 6 catalytic domain 2 in complex with trichostatin A Method: X-RAY DIFFRACTION / Resolution: 2.79 Å PDB-5eef: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 1 in complex with trichostatin A Method: X-RAY DIFFRACTION / Resolution: 2.151 Å PDB-5eei: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with SAHA Method: X-RAY DIFFRACTION / Resolution: 1.32 Å PDB-5eek: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with trichostatin A Method: X-RAY DIFFRACTION / Resolution: 1.59 Å PDB-5eem: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 Method: X-RAY DIFFRACTION / Resolution: 2 Å PDB-5een: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with belinostat Method: X-RAY DIFFRACTION / Resolution: 1.861 Å PDB-5ef7: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with HPOB Method: X-RAY DIFFRACTION / Resolution: 1.9 Å PDB-5ef8: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with panobinostat Method: X-RAY DIFFRACTION / Resolution: 2.6 Å PDB-5efb: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with oxamflatin Method: X-RAY DIFFRACTION / Resolution: 2.543 Å PDB-5efg: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with acetate Method: X-RAY DIFFRACTION / Resolution: 2.25 Å PDB-5efh: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with trifluoroketone transition state analogue Method: X-RAY DIFFRACTION / Resolution: 2.162 Å PDB-5efj: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with HC toxin Method: X-RAY DIFFRACTION / Resolution: 1.73 Å PDB-5efk: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 (Y745F mutant) in complex with alpha tubulin K40 tripeptide substrate Method: X-RAY DIFFRACTION / Resolution: 1.82 Å PDB-5efn: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 (H574A) in complex with histone H4 Lys6 tripeptide substrate Method: X-RAY DIFFRACTION / Resolution: 1.804 Å
Chemicals	ChemComp-TSN: TRICHOSTATIN A / antifungal, antibioticYM ChemComp-ZN: Unknown entry ChemComp-K: Unknown entry ChemComp-HOH: WATER ChemComp-NH4: AMMONIUM ION ChemComp-SO4: SULFATE ION ChemComp-EDO: 1,2-ETHANEDIOL ChemComp-SHH: OCTANEDIOIC ACID HYDROXYAMIDE PHENYLAMIDE ChemComp-GOL: GLYCEROL ChemComp-CL: Unknown entry ChemComp-MG: Unknown entry ChemComp-IOD: IODIDE ION ChemComp-NA: Unknown entry ChemComp-FMT: FORMIC ACID ChemComp-5OG: Belinostat / inhibitorYM ChemComp-5OJ: 4-[2-[2-hydroxyethyl(phenyl)amino]-2-oxidanylidene-ethyl]-~{N}-oxidanyl-benzamide ChemComp-LBH: Panobinostat / medication, inhibitorYM ChemComp-5OK: Oxamflatin ChemComp-ACT: ACETATE ION ChemComp-FKS: 7-[(3-aminopropyl)amino]-1,1,1-trifluoroheptane-2,2-diol ChemComp-BR: BROMIDE ION ChemComp-NO3: NITRATE ION ChemComp-PEG: DI(HYDROXYETHYL)ETHER ChemComp-MCM*: 7-AMINO-4-METHYL-CHROMEN-2-ONE
Source	escherichia coli (E. coli) homo sapiens (human) danio rerio (zebrafish) bipolaris zeicola (fungus)
Keywords	HYDROLASE/HYDROLASE INHIBITOR / HYDROLASE-HYDROLASE INHIBITOR complex / HYDROLASE