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Structure paper

TitleDistinct tRNA Accommodation Intermediates Observed on the Ribosome with the Antibiotics Hygromycin A and A201A.
Journal, issue, pagesMol. Cell, Vol. 58, Page 832-844, Year 2015
Publish dateMar 31, 2015 (structure data deposition date)
AuthorsPolikanov, Y.S. / Starosta, A.L. / Juette, M.F. / Altman, R.B. / Terry, D.S. / Lu, W. / Burnett, B.J. / Dinos, G. / Reynolds, K.A. / Blanchard, S.C. ...Polikanov, Y.S. / Starosta, A.L. / Juette, M.F. / Altman, R.B. / Terry, D.S. / Lu, W. / Burnett, B.J. / Dinos, G. / Reynolds, K.A. / Blanchard, S.C. / Steitz, T.A. / Wilson, D.N.
External linksMol. Cell / PubMed:26028538
MethodsX-ray diffraction
Resolution2.6 - 3.1 Å
Structure data

PDB-4z3s:
Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution
Method: X-RAY DIFFRACTION / Resolution: 2.65 Å

PDB-5dox:
Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution
Method: X-RAY DIFFRACTION / Resolution: 3.1 Å

PDB-5doy:
Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-4M2:
3'-deoxy-3'-{[(2E)-3-(4-{[(4Z)-6-O-(6-deoxy-3,4-di-O-methyl-alpha-D-mannopyranosyl)-5-O-methyl-alpha-D-threo-hex-4-enofuranosyl]oxy}phenyl)-2-methylprop-2-enoyl]amino}-N,N-dimethyladenosine

ChemComp-K:
Unknown entry

ChemComp-ZN:
Unknown entry

ChemComp-SF4:
IRON/SULFUR CLUSTER

ChemComp-FME:
N-FORMYLMETHIONINE

ChemComp-HOH:
WATER

ChemComp-HGR:
Hygromycin A / antibiotic*YM

Source
  • escherichia coli (E. coli)
  • thermus thermophilus hb8 (bacteria)
  • thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (bacteria)
  • enterobacteria phage t4 (virus)
  • thermus thermophilus (bacteria)
KeywordsRibosome/Antibiotic / Hygromycin A / A201A / antibiotic / 70S ribosome / inhibition of translation / peptidyl transferase inhibitors / tRNA accommodation intermediate / single-molecule FRET / Ribosome-Antibiotic complex

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