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Structure paper

TitleTwo distinct modes of metal ion binding in the nuclease active site of a viral DNA-packaging terminase: insight into the two-metal-ion catalytic mechanism.
Journal, issue, pagesNucleic Acids Res., Vol. 43, Page 11003-11016, Year 2015
Publish dateJun 12, 2015 (structure data deposition date)
AuthorsZhao, H. / Lin, Z. / Lynn, A.Y. / Varnado, B. / Beutler, J.A. / Murelli, R.P. / Le Grice, S.F. / Tang, L.
External linksNucleic Acids Res. / PubMed:26450964
MethodsX-ray diffraction
Resolution1.517 - 1.86 Å
Structure data

PDB-5c10:
Nuclease domain of the large terminase subunit gp2 of bacterial virus Sf6
Method: X-RAY DIFFRACTION / Resolution: 1.55 Å

PDB-5c12:
Nuclease domain of the large terminase subunit gp2 of bacterial virus Sf6
Method: X-RAY DIFFRACTION / Resolution: 1.517 Å

PDB-5c15:
K428A mutant nuclease domain of the large terminase subunit gp2 of bacterial virus Sf6 with Manganese
Method: X-RAY DIFFRACTION / Resolution: 1.57 Å

PDB-5c2d:
K428A mutant gp2c of large terminase subunit from bacteriophage sf6 with calcium
Method: X-RAY DIFFRACTION / Resolution: 1.59 Å

PDB-5c2f:
K428A mutant nuclease domain of the large terminase subunit gp2 of bacterial virus Sf6 with Manganese and beta-thujaplicinol
Method: X-RAY DIFFRACTION / Resolution: 1.86 Å

Chemicals

ChemComp-HOH:
WATER

ChemComp-MG:
Unknown entry

ChemComp-MN:
Unknown entry

ChemComp-CA:
Unknown entry

ChemComp-JTH:
2,7-dihydroxy-4-(propan-2-yl)cyclohepta-2,4,6-trien-1-one

Source
  • enterobacteria phage sf6 (virus)
KeywordsMETAL BINDING PROTEIN / nuclease domain / metal binding site / RNAse H / K428A mutant / metal ion

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