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Structure paper

TitleBacterial Sugar 3,4-Ketoisomerases: Structural Insight into Product Stereochemistry.
Journal, issue, pagesBiochemistry, Vol. 54, Page 4495-4506, Year 2015
Publish dateMay 15, 2015 (structure data deposition date)
AuthorsThoden, J.B. / Vinogradov, E. / Gilbert, M. / Salinger, A.J. / Holden, H.M.
External linksBiochemistry / PubMed:26125548
MethodsX-ray diffraction
Resolution1.7 - 2.3 Å
Structure data

PDB-4zu4:
X-ray structure of the 3,4-ketoisomerase domain of FdtD from Shewanella denitrificans
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-4zu5:
Crystal structure of the QdtA 3,4-Ketoisomerase from Thermoanaerobacterium thermosaccharolyticum, apo form
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-4zu7:
X-ray structure if the QdtA 3,4-ketoisomerase from Thermoanaerobacterium thermosaccharolyticum, double mutant Y17R/R97H, in complex with TDP
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

Chemicals

ChemComp-4TG:
dTDP-4,6-dideoxy-4-formamido-glucose

ChemComp-CL:
Unknown entry

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-NA:
Unknown entry

ChemComp-PO4:
PHOSPHATE ION

ChemComp-HOH:
WATER

ChemComp-THM:
THYMIDINE

ChemComp-PXN:
(2S)-1-[3-{[(2R)-2-hydroxypropyl]oxy}-2,2-bis({[(2R)-2-hydroxypropyl]oxy}methyl)propoxy]propan-2-ol

ChemComp-TYD:
THYMIDINE-5'-DIPHOSPHATE

Source
  • shewanella denitrificans (strain os217 / atcc baa-1090 / dsm 15013) (bacteria)
  • thermoanaerobacterium thermosaccharolyticum (bacteria)
KeywordsISOMERASE / Cupin / ketoisomerase / lipopolysaccharide / 3 / 4-ketoisomerase / cupin isomerase 3-4-ketoisomerase

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