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Structure paper

TitleDramatic Improvement of Crystals of Large RNAs by Cation Replacement and Dehydration.
Journal, issue, pagesStructure, Vol. 22, Page 1363-1371, Year 2014
Publish dateJul 10, 2014 (structure data deposition date)
AuthorsZhang, J. / Ferre-D'Amare, A.R.
External linksStructure / PubMed:25185828
MethodsX-ray diffraction
Resolution2.01 - 8.503 Å
Structure data

PDB-4tzp:
As Grown, Untreated Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its cognate tRNAGly, and B. subtilis YbxF protein
Method: X-RAY DIFFRACTION / Resolution: 8.503 Å

PDB-4tzv:
Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate post crystallization
Method: X-RAY DIFFRACTION / Resolution: 5.03 Å

PDB-4tzw:
Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and replacing Mg2+ with Sr2+ post crystallization
Method: X-RAY DIFFRACTION / Resolution: 4.671 Å

PDB-4tzx:
Vibrio Vulnificus Adenine Riboswitch variant, grown in Mg2+
Method: X-RAY DIFFRACTION / Resolution: 2.01 Å

PDB-4tzy:
Vibrio vulnificus Adenine Riboswitch Variant, grown in both Sr2+ and Mg2+
Method: X-RAY DIFFRACTION / Resolution: 2.57 Å

PDB-4tzz:
Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization
Method: X-RAY DIFFRACTION / Resolution: 3.64 Å

Chemicals

ChemComp-SR:
STRONTIUM ION

ChemComp-ADE:
ADENINE

ChemComp-MG:
Unknown entry

ChemComp-HOH:
WATER

Source
  • bacillus subtilis (bacteria)
  • oceanobacillus iheyensis (bacteria)
  • oceanobacillus iheyensis hte831 (bacteria)
  • vibrio vulnificus (bacteria)
KeywordsRibosomal Protein/RNA / RNA / Riboswitch / T-box / tRNA / Ribosomal Protein-RNA complex / Adenine / Gene regulation

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