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Structure paper

TitleTwo Scaffolds from Two Flips: (alpha, beta)/(beta, gamma) CH2/NH "Met-Im" Analogues of dTTP.
Journal, issue, pagesOrg. Lett., Vol. 17, Page 2586-2589, Year 2015
Publish dateNov 12, 2014 (structure data deposition date)
AuthorsKadina, A.P. / Kashemirov, B.A. / Oertell, K. / Batra, V.K. / Wilson, S.H. / Goodman, M.F. / McKenna, C.E.
External linksOrg. Lett. / PubMed:25970636
MethodsX-ray diffraction
Resolution1.92 Å
Structure data

PDB-4rt2:
Ternary complex crystal structure of DNA polymerase Beta with (alpha,beta)-CH2-(beta,gamma)-NH-dTTP
Method: X-RAY DIFFRACTION / Resolution: 1.92 Å

PDB-4rt3:
Ternary complex crystal structure of DNA polymerase Beta with (alpha, beta)-NH-(beta,gamma)-CH2-dTTP
Method: X-RAY DIFFRACTION / Resolution: 1.92 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-CL:
Unknown entry

ChemComp-N6T:
2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonoamino)phosphoryl]methyl}phosphoryl]-3,4-dihydrothymidine

ChemComp-HOH:
WATER

ChemComp-C6T:
2'-deoxy-5'-O-[(S)-hydroxy{[(R)-hydroxy(phosphonomethyl)phosphoryl]amino}phosphoryl]-3,4-dihydrothymidine

Source
  • homo sapiens (human)
  • synthetic construct (others)
KeywordsTRANSFERASE/DNA / DNA Polymerase Beta / Conformational Change / enzyme mechanism / TRANSFERASE-DNA complex / Ternary complex

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