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Structure paper

TitleRescuing DNA repair activity by rewiring the H-atom transfer pathway in the radical SAM enzyme, spore photoproduct lyase.
Journal, issue, pagesChem. Commun. (Camb. ), Vol. 50, Page 14201-14204, Year 2014
Publish dateOct 1, 2014 (structure data deposition date)
AuthorsBenjdia, A. / Heil, K. / Winkler, A. / Carell, T. / Schlichting, I.
External linksChem. Commun. (Camb. ) / PubMed:25285338
MethodsX-ray diffraction
Resolution2.1 - 2.6 Å
Structure data

PDB-4rh0:
Spore photoproduct lyase C140A/S76C mutant with bound AdoMet
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-4rh1:
Spore photoproduct lyase C140A/S76C mutant with bound AdoMet and dinucleoside spore photoproduct
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

Chemicals

ChemComp-EEM:
[(3S)-3-amino-4-hydroxy-4-oxo-butyl]-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl]-methyl-selanium

ChemComp-SO4:
SULFATE ION

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-SF4:
IRON/SULFUR CLUSTER

ChemComp-HOH:
WATER

ChemComp-0TT:
1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-[[(5R)-1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-methyl-2,4-bis(oxidanylidene)-1,3-diazinan-5-yl]methyl]pyrimidine-2,4-dione

Source
  • geobacillus thermodenitrificans ng80-2 (bacteria)
KeywordsLYASE / radical AdoMet enzyme / radical SAM enzyme / DNA repair / Tim Barrel / DNA lyase

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