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Structure paper

TitleThe Formation of Pyrroline and Tetrahydropyridine Rings in Amino Acids Catalyzed by Pyrrolysine Synthase (PylD).
Journal, issue, pagesAngew. Chem. Int. Ed. Engl., Vol. 53, Page 8150-8153, Year 2014
Publish dateApr 11, 2014 (structure data deposition date)
AuthorsQuitterer, F. / Beck, P. / Bacher, A. / Groll, M.
External linksAngew. Chem. Int. Ed. Engl. / PubMed:24916332
MethodsX-ray diffraction
Resolution1.9 - 2.2 Å
Structure data

PDB-4q39:
PylD in complex with pyrrolysine and NADH
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-4q3a:
PylD cocrystallized with L-Lysine-Ne-3S-methyl-L-ornithine and NAD+
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-4q3b:
PylD cocrystallized with L-Lysine-Ne-D-lysine and NAD+
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-4q3c:
PylD cocrystallized with L-Lysine-Ne-L-lysine and NAD+
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-4q3d:
PylD cocrystallized with L-Ornithine-Nd-D-ornithine and NAD+
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-4q3e:
PylD cocrystallized with L-Ornithine-Nd-D-lysine and NAD+
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

Chemicals

ChemComp-NAI:
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE

ChemComp-NA:
Unknown entry

ChemComp-MG:
Unknown entry

ChemComp-PYL:
PYRROLYSINE

ChemComp-GOL:
GLYCEROL

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-HOH:
WATER

ChemComp-2YC:
N~6~-{[(2S,3S)-3-methyl-3,4-dihydro-2H-pyrrol-2-yl]carbonyl}-L-lysine

ChemComp-SO4:
SULFATE ION

ChemComp-2YF:
N~6~-[(2R)-2,3,4,5-tetrahydropyridin-2-ylcarbonyl]-L-lysine

ChemComp-NAD:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE / NAD*YM

ChemComp-2YG:
N~6~-L-lysyl-L-lysine

ChemComp-2YH:
N~5~-D-ornithyl-L-ornithine

ChemComp-2YJ:
N~5~-D-lysyl-L-ornithine

Source
  • methanosarcina barkeri (archaea)
KeywordsOXIDOREDUCTASE / Rossmann Fold / Dehydrogenase / Pyrrolysine

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