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Structure paper

TitleCrystal structures of the human RNA demethylase Alkbh5 reveal basis for substrate recognition
Journal, issue, pagesJ. Biol. Chem., Vol. 289, Page 11571-11583, Year 2014
Publish dateNov 27, 2013 (structure data deposition date)
AuthorsFeng, C. / Liu, Y. / Wang, G. / Deng, Z. / Zhang, Q. / Wu, W. / Tong, Y. / Cheng, C. / Chen, Z.
External linksJ. Biol. Chem. / PubMed:24616105
MethodsX-ray diffraction
Resolution1.78 - 2.5 Å
Structure data

PDB-4nrm:
Crystal structure of human ALKBH5 in complex with citrate and acetate
Method: X-RAY DIFFRACTION / Resolution: 2.17 Å

PDB-4nro:
Crystal structure of human ALKBH5 in complex with alpha-ketoglutarate
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-4nrp:
Crystal structure of human ALKBH5 in complex with N-oxalylglycine
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-4nrq:
Crystal structure of human ALKBH5 in complex with pyridine-2,4-dicarboxylate
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-4o7x:
Crystal structure of human ALKBH5 in complex with Mn2+
Method: X-RAY DIFFRACTION / Resolution: 1.78 Å

Chemicals

ChemComp-FLC:
CITRATE ANION

ChemComp-ACT:
ACETATE ION

ChemComp-HOH:
WATER

ChemComp-MN:
Unknown entry

ChemComp-AKG:
2-OXOGLUTARIC ACID

ChemComp-OGA:
N-OXALYLGLYCINE

ChemComp-PD2:
PYRIDINE-2,4-DICARBOXYLIC ACID

Source
  • homo sapiens (human)
KeywordsOXIDOREDUCTASE / alkbh5 / 6-methyl adenosine / PROTEIN/DNA INTERACTION / HUMAN DIOXYGENASE / METAL-BINDING / demethylation / RNA REPAIR / NUCLEUS

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