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TitleMetal-dependent conformational activation explains highly promutagenic replication across O6-methylguanine by human DNA polymerase beta.
Journal, issue, pagesJ. Am. Chem. Soc., Vol. 136, Page 5709-5721, Year 2014
Publish dateAug 27, 2013 (structure data deposition date)
AuthorsKoag, M.C. / Lee, S.
External linksJ. Am. Chem. Soc. / PubMed:24694247
MethodsX-ray diffraction
Resolution2.13 - 2.557 Å
Structure data

PDB-4mf2:
Structure of human DNA polymerase beta complexed with O6MG as the template base in a 1-nucleotide gapped DNA
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-4mfc:
Structure of human DNA polymerase beta complexed with O6MG in the template base paired with incoming non-hydrolyzable CTP
Method: X-RAY DIFFRACTION / Resolution: 2.13 Å

PDB-4mff:
Structure of human DNA polymerase beta complexed with O6MG in the template base paired with incoming non-hydrolyzable TTP
Method: X-RAY DIFFRACTION / Resolution: 2.55 Å

PDB-4nxz:
DNA polymerase beta with O6mG in the template base opposite to incoming non-hydrolyzable TTP with manganese in the active site
Method: X-RAY DIFFRACTION / Resolution: 2.557 Å

PDB-4ny8:
DNA polymerase beta with O6mG in the template base opposite to incoming non-hydrolyzable CTP with manganese in the active site
Method: X-RAY DIFFRACTION / Resolution: 2.246 Å

Chemicals

ChemComp-NA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-MG:
Unknown entry

ChemComp-0KX:
2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine

ChemComp-1FZ:
5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine

ChemComp-MN:
Unknown entry

Source
  • homo sapiens (human)
KeywordsTRANSFERASE/DNA / protein-DNA complex / polymerase X family / DNA polymerase / TRANSFERASE-DNA complex / dna polymerase x family / dna synthesis / TRANSFERASE / LYASE/DNA / DNA binding / DNA polymerase fold / nucleotidyl transfer / nucleolus / LYASE-DNA complex

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