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Structure paper

TitleCrystal structure of an HD-GYP domain cyclic-di-GMP phosphodiesterase reveals an enzyme with a novel trinuclear catalytic iron centre.
Journal, issue, pagesMol. Microbiol., Vol. 91, Page 26-38, Year 2014
Publish dateAug 21, 2013 (structure data deposition date)
AuthorsBellini, D. / Caly, D.L. / McCarthy, Y. / Bumann, M. / An, S.Q. / Dow, J.M. / Ryan, R.P. / Walsh, M.A.
External linksMol. Microbiol. / PubMed:24176013
MethodsX-ray diffraction
Resolution2.03 - 2.68 Å
Structure data

PDB-4mcw:
Crystal structure of a HD-GYP domain (a cyclic-di-GMP phosphodiesterase) containing a tri-nuclear metal centre
Method: X-RAY DIFFRACTION / Resolution: 2.03 Å

PDB-4mdz:
Crystal structure of a HD-GYP domain (a cyclic-di-GMP phosphodiesterase) containing a tri-nuclear metal centre
Method: X-RAY DIFFRACTION / Resolution: 2.68 Å

PDB-4me4:
Crystal structure of a HD-GYP domain (a cyclic-di-GMP phosphodiesterase) containing a tri-nuclear metal centre
Method: X-RAY DIFFRACTION / Resolution: 2.55 Å

Chemicals

ChemComp-FE:
Unknown entry

ChemComp-SIN:
SUCCINIC ACID

ChemComp-IMD:
IMIDAZOLE

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-HOH:
WATER

ChemComp-C2E:
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)

ChemComp-5GP:
GUANOSINE-5'-MONOPHOSPHATE

Source
  • persephonella marina (bacteria)
KeywordsHYDROLASE / Structural Genomics / Oxford Protein Production Facility / OPPF / phosphohydrolase

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