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TitleA Disconnect between High-Affinity Binding and Efficient Regulation by Antifolates and Purines in the Tetrahydrofolate Riboswitch.
Journal, issue, pagesChem. Biol., Vol. 21, Page 205-216, Year 2014
Publish dateJul 26, 2013 (structure data deposition date)
AuthorsTrausch, J.J. / Batey, R.T.
External linksChem. Biol. / PubMed:24388757
MethodsX-ray diffraction
Resolution1.768 - 2.1 Å
Structure data

PDB-4lvv:
Structure of the THF riboswitch
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-4lvw:
Structure of the THF riboswitch bound to 7-deazaguanine
Method: X-RAY DIFFRACTION / Resolution: 1.768 Å

PDB-4lvx:
Structure of the THF riboswitch bound to tetrahydrobiopterin
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-4lvy:
Structure of the THF riboswitch bound to pemetrexed
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-4lvz:
Structure of the THF riboswitch bound to 2,6-diaminopurine
Method: X-RAY DIFFRACTION / Resolution: 1.77 Å

PDB-4lw0:
Structure of the THF riboswitch bound to adenine
Method: X-RAY DIFFRACTION / Resolution: 1.889 Å

Chemicals

ChemComp-FFO:
N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid

ChemComp-HOH:
WATER

ChemComp-7DG:
7-DEAZAGUANINE

ChemComp-H4B:
5,6,7,8-TETRAHYDROBIOPTERIN / neurotransmitter*YM

ChemComp-LYA:
2-{4-[2-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-5-YL)-ETHYL]-BENZOYLAMINO}-PENTANEDIOIC ACID / medication, chemotherapy*YM

ChemComp-6AP:
9H-PURINE-2,6-DIAMINE

ChemComp-ADE:
ADENINE

KeywordsRNA / Aptamers / Nucleotide / Bacterial Proteins / Base Sequence / Binding Sites / Calorimetry / Folic Acid / Gene Expression Regulation / Bacterial / Guanine / Leucovorin / Ligands / Magnesium / Molecular Sequence Data / Nucleic Acid Conformation / Point Mutation / Protein Binding / S-Adenosylmethionine / Streptococcus mutans / Terminator Regions / Genetic / Tetrahydrofolates / Thermodynamics / Transcription / three-way junction / pseudoknot / regulation / ncRNA / THF binding / mRNA / Bacillus subtilis / Protein Structure / Secondary / Riboswitch / tetrahydrobiopterin binding / Pemetrexed Binding / 2 / 6-diaminopurine / Adenine binding

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