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Structure paper

TitleAdaptation of aminoacyl-tRNA synthetase catalytic core to carrier protein aminoacylation.
Journal, issue, pagesStructure, Vol. 21, Page 614-626, Year 2013
Publish dateSep 13, 2012 (structure data deposition date)
AuthorsMocibob, M. / Ivic, N. / Luic, M. / Weygand-Durasevic, I.
External linksStructure / PubMed:23541895
MethodsX-ray diffraction
Resolution1.95 - 2.44 Å
Structure data

PDB-4h2s:
Crystal structure of Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with cognate carrier protein and AMP
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-4h2t:
Crystal structure of Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with cognate carrier protein and an analogue of glycyl adenylate
Method: X-RAY DIFFRACTION / Resolution: 2.44 Å

PDB-4h2u:
Crystal structure of Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with cognate carrier protein and ATP
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-4h2v:
Crystal structure of Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with glycylated carrier protein
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-4h2w:
Crystal structure of engineered Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with carrier protein from Agrobacterium tumefaciens and AMP
Method: X-RAY DIFFRACTION / Resolution: 1.95 Å

PDB-4h2x:
Crystal structure of engineered Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with carrier protein from Agrobacterium tumefaciens and an analogue of glycyl adenylate
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-4h2y:
Crystal structure of engineered Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with carrier protein from Agrobacterium tumefaciens and ATP
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-AMP:
ADENOSINE MONOPHOSPHATE / AMP*YM / Adenosine monophosphate

ChemComp-ACT:
ACETATE ION / Acetate

ChemComp-PNS:
4'-PHOSPHOPANTETHEINE / Phosphopantetheine

ChemComp-HOH:
WATER / Water

ChemComp-G5A:
5'-O-(glycylsulfamoyl)adenosine

ChemComp-SO4:
SULFATE ION / Sulfate

ChemComp-ATP:
ADENOSINE-5'-TRIPHOSPHATE / ATP, energy-carrying molecule*YM / Adenosine triphosphate

ChemComp-MG:
Unknown entry

ChemComp-PO4:
PHOSPHATE ION / Phosphate

ChemComp-GOL:
GLYCEROL / Glycerol

ChemComp-H2V:
S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] aminoethanethioate

ChemComp-CL:
Unknown entry / Chloride

ChemComp-5GP:
GUANOSINE-5'-MONOPHOSPHATE / Guanosine monophosphate

Source
  • bradyrhizobium japonicum (bacteria)
  • agrobacterium fabrum (strain c58 / atcc 33970) (bacteria)
  • agrobacterium tumefaciens (bacteria)
KeywordsLIGASE / ATP binding / glycine binding / carrier protein / aminoacyl-tRNA synthetase / seryl-tRNA synthetase / seryl-tRNA synthetase.

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