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Structure paper

TitleInteractions of non-polar and "Click-able" nucleotides in the confines of a DNA polymerase active site.
Journal, issue, pagesChem. Commun. (Camb. ), Vol. 48, Page 8320-8322, Year 2012
Publish dateApr 11, 2012 (structure data deposition date)
AuthorsObeid, S. / Busskamp, H. / Welte, W. / Diederichs, K. / Marx, A.
External linksChem. Commun. (Camb. ) / PubMed:22766607
MethodsX-ray diffraction
Resolution1.8 - 2.2 Å
Structure data

PDB-4elt:
Snapshot of the large fragment of DNA polymerase I from Thermus Aquaticus processing modified pyrimidines
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-4elu:
Snapshot of the large fragment of DNA polymerase I from Thermus Aquaticus processing modified pyrimidines
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

Chemicals

ChemComp-0R5:
2'-deoxy-5-[(4-ethynylphenyl)ethynyl]uridine 5'-(tetrahydrogen triphosphate)

ChemComp-MG:
Unknown entry

ChemComp-GOL:
GLYCEROL

ChemComp-ACT:
ACETATE ION

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-HOH:
WATER

ChemComp-0R6:
2'-deoxy-5-[(4-ethynylphenyl)ethynyl]cytidine 5'-(tetrahydrogen triphosphate)

ChemComp-PGE:
TRIETHYLENE GLYCOL

Source
  • thermus aquaticus (bacteria)
  • synthetic dna (others)
KeywordsTRANSFERASE/DNA / DNA polymerase / modified nucleotides / A family / DNA synthesis / rigid linker / non-natural nucleotide / TRANSFERASE-DNA complex

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