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Structure paper

TitleDNA polymerase beta substrate specificity: side chain modulation of the "A-rule".
Journal, issue, pagesJ. Biol. Chem., Vol. 284, Page 31680-31689, Year 2009
Publish dateAug 25, 2009 (structure data deposition date)
AuthorsBeard, W.A. / Shock, D.D. / Batra, V.K. / Pedersen, L.C. / Wilson, S.H.
External linksJ. Biol. Chem. / PubMed:19759017
MethodsX-ray diffraction
Resolution2 - 2.6 Å
Structure data

PDB-3isb:
Binary complex of human DNA polymerase beta with a gapped DNA
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-3isc:
Binary complex of human DNA polymerase beta with an abasic site (THF) in the gapped DNA
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-3isd:
Ternary complex of human DNA polymerase beta with an abasic site (THF): DAPCPP mismatch
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

Chemicals

ChemComp-NA:
Unknown entry

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

ChemComp-MN:
Unknown entry

ChemComp-F2A:
2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]adenosine

ChemComp-EDO:
1,2-ETHANEDIOL

Source
  • homo sapiens (human)
  • synthetic construct (others)
KeywordsTRANSFERASE/DNA / Nucleotidyl Transferase / DNA Polymerase Beta / Binary complex / gapped DNA / DNA damage / DNA repair / DNA replication / DNA synthesis / DNA-binding / DNA-directed DNA polymerase / Lyase / Magnesium / Metal-binding / Methylation / Nucleotidyltransferase / Nucleus / Polymorphism / Sodium / Transferase / TRANSFERASE-DNA COMPLEX / abasic site / Tetrahydrofuran / Ternary complex / 'A-rule'

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