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Structure paper

TitleStructural basis of the hydride transfer mechanism in F(420)-dependent methylenetetrahydromethanopterin dehydrogenase
Journal, issue, pagesBiochemistry, Vol. 48, Page 10098-10105, Year 2009
Publish dateAug 20, 2009 (structure data deposition date)
AuthorsCeh, K. / Demmer, U. / Warkentin, E. / Moll, J. / Thauer, R.K. / Shima, S. / Ermler, U.
External linksBiochemistry / PubMed:19761261
MethodsX-ray diffraction
Resolution1.8 - 2.1 Å
Structure data

PDB-3iqe:
Structure of F420 dependent methylene-tetrahydromethanopterin dehydrogenase in complex with methylene-tetrahydromethanopterin and coenzyme F420
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-3iqf:
Structure of F420 dependent methylene-tetrahydromethanopterin dehydrogenase in complex with methenyl-tetrahydromethanopterin
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-3iqz:
Structure of F420 dependent methylene-tetrahydromethanopterin dehydrogenase in complex with methylene-tetrahydromethanopterin
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

Chemicals

ChemComp-H4M:
5,10-DIMETHYLENE TETRAHYDROMETHANOPTERIN

ChemComp-F42:
COENZYME F420

ChemComp-CA:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-E4M:
1-{4-[(6S,6aR,7R)-3-amino-6,7-dimethyl-1-oxo-1,2,5,6,6a,7-hexahydro-8H-imidazo[1,5-f]pteridin-10-ium-8-yl]phenyl}-1-deoxy-5-O-{5-O-[(S)-{[(1S)-1,3-dicarboxypropyl]oxy}(hydroxy)phosphoryl]-alpha-D-ribofuranosyl}-D-ribitol

ChemComp-GOL:
GLYCEROL

Source
  • methanopyrus kandleri (archaea)
KeywordsOXIDOREDUCTASE / ternary complex of protein / substrate and co-substrate / Methanogenesis / One-carbon metabolism / binary complex of protein and substrate

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