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Structure paper

TitleBinding of adenosine-based ligands to the MjDim1 rRNA methyltransferase: implications for reaction mechanism and drug design.
Journal, issue, pagesBiochemistry, Vol. 49, Page 2697-2704, Year 2010
Publish dateMar 26, 2009 (structure data deposition date)
AuthorsO'Farrell, H.C. / Musayev, F.N. / Scarsdale, J.N. / Rife, J.P.
External linksBiochemistry / PubMed:20163168
MethodsX-ray diffraction
Resolution1.6 - 2.2 Å
Structure data

PDB-3grr:
Crystal Structure of the complex between S-Adenosyl Homocysteine and Methanocaldococcus jannaschi Dim1.
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-3gru:
Crystal Structure of the Complex between AMP and Methanocaldococcus jannaschi Dim1
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-3grv:
Crystal Structure of the Complex between Adenosine and Methanocaldococcus jannaschi Dim1
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-3gry:
Crystal Structure of the complex between S-Adenosyl Methionine and Methanocaldococcus jannaschi Dim1.
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

Chemicals

ChemComp-SAH:
S-ADENOSYL-L-HOMOCYSTEINE

ChemComp-HOH:
WATER

ChemComp-AMP:
ADENOSINE MONOPHOSPHATE / AMP*YM

ChemComp-SO4:
SULFATE ION

ChemComp-ADN:
ADENOSINE

ChemComp-SAM:
S-ADENOSYLMETHIONINE

ChemComp-PO4:
PHOSPHATE ION

Source
  • methanocaldococcus jannaschii (archaea)
KeywordsTRANSFERASE / DimethylAdenosine Transferase / Rossmann fold / Ribosomal Assembly S-Adenosyl-L-Methionine / RRNA Processing / RNA-Binding / Methyl Transferase / Methyltransferase / S-adenosyl-L-methionine / RRNA

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