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Structure paper

TitleAnnotating enzymes of uncertain function: the deacylation of D-amino acids by members of the amidohydrolase superfamily.
Journal, issue, pagesBiochemistry, Vol. 48, Page 6469-6481, Year 2009
Publish dateMar 5, 2009 (structure data deposition date)
AuthorsCummings, J.A. / Fedorov, A.A. / Xu, C. / Brown, S. / Fedorov, E. / Babbitt, P.C. / Almo, S.C. / Raushel, F.M.
External linksBiochemistry / PubMed:19518059
MethodsX-ray diffraction
Resolution1.5 - 1.8 Å
Structure data

PDB-3gip:
Crystal structure of N-acyl-D-Glutamate Deacylase from Bordetella Bronchiseptica complexed with zinc, acetate and formate ions.
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-3giq:
Crystal structure of N-acyl-D-Glutamate Deacylase from Bordetella Bronchiseptica complexed with zinc and phosphonate inhibitor, a mimic of the reaction tetrahedral intermediate.
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

Chemicals

ChemComp-ACY:
ACETIC ACID

ChemComp-FMT:
FORMIC ACID

ChemComp-ZN:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-G01:
N-[(R)-hydroxy(methyl)phosphoryl]-D-glutamic acid

Source
  • bordetella bronchiseptica (bacteria)
KeywordsHYDROLASE / N-acyl-D-Glutamate Deacylase / Amidohydrolase family / amidohydrolase / reaction intermediate

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