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Structure paper

TitleMechanism of substrate recognition and PLP-induced conformational changes in LL-diaminopimelate aminotransferase from Arabidopsis thaliana.
Journal, issue, pagesJ. Mol. Biol., Vol. 384, Page 1314-1329, Year 2008
Publish dateSep 15, 2008 (structure data deposition date)
AuthorsWatanabe, N. / Clay, M.D. / van Belkum, M.J. / Cherney, M.M. / Vederas, J.C. / James, M.N.
External linksJ. Mol. Biol. / PubMed:18952095
MethodsX-ray diffraction
Resolution1.55 - 2.05 Å
Structure data

PDB-3ei5:
Crystal structure of LL-diaminopimelate aminotransferase from Arabidopsis thaliana complexed with PLP-Glu: an external aldimine mimic
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-3ei6:
Crystal structure of LL-diaminopimelate aminotransferase from Arabidopsis thaliana complexed with PLP-DAP: an external aldimine mimic
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-3ei7:
Crystal structure of apo-LL-diaminopimelate aminotransferase from Arabidopsis thaliana (no PLP)
Method: X-RAY DIFFRACTION / Resolution: 1.99 Å

PDB-3ei8:
Crystal structure of K270N variant of LL-diaminopimelate aminotransferase from Arabidopsis thaliana complexed with LL-DAP: External aldimine form
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-3ei9:
Crystal structure of K270N variant of LL-diaminopimelate aminotransferase from Arabidopsis thaliana complexed with L-Glu: External aldimine form
Method: X-RAY DIFFRACTION / Resolution: 1.55 Å

PDB-3eia:
Crystal structure of K270Q variant of LL-diaminopimelate aminotransferase from Arabidopsis thaliana complexed with L-Glu: External aldimine form
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-3eib:
Crystal structure of K270N variant of LL-diaminopimelate aminotransferase from Arabidopsis thaliana
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

Chemicals

ChemComp-PGU:
N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-glutamic acid

ChemComp-GOL:
GLYCEROL

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

ChemComp-PL4:
(2S,6S)-2-amino-6-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]heptanedioic acid

ChemComp-PLP:
PYRIDOXAL-5'-PHOSPHATE

ChemComp-PL5:
(2S,6S)-2-amino-6-{[(1E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}heptanedioic acid

ChemComp-PL6:
(E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-glutamic acid

Source
  • arabidopsis thaliana (thale cress)
KeywordsTRANSFERASE / aminotransferase / lysine biosynthesis / Pyridoxal 5' phosphate / external aldimine / LL-diaminopimelate / Chloroplast / Pyridoxal phosphate / Transit peptide / Arabidopsis thaliana / Plastid

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