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Structure paper

TitleElectronic structure of the metal center in the Cd(2+), Zn(2+), and Cu(2+) substituted forms of KDO8P synthase: implications for catalysis.
Journal, issue, pagesBiochemistry, Vol. 48, Page 3610-3630, Year 2009
Publish dateSep 24, 2000 (structure data deposition date)
AuthorsKona, F. / Tao, P. / Martin, P. / Xu, X. / Gatti, D.L.
External linksBiochemistry / PubMed:19228070
MethodsX-ray diffraction
Resolution1.7 - 1.95 Å
Structure data

PDB-1fws:
AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH PEP AND CADMIUM
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-1fww:
AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH PEP, A5P AND CADMIUM
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-2a21:
Aquifex aeolicus KDO8PS in complex with PEP, PO4, and Zn2+
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-2a2i:
Aquifex aeolicus KDO8PS in complex with PEP, A5P, Zn2+
Method: X-RAY DIFFRACTION / Resolution: 1.95 Å

PDB-3e0i:
Cu2+ substituted Aquifex aeolicus KDO8PS in complex with PEP
Method: X-RAY DIFFRACTION / Resolution: 1.703 Å

PDB-3e12:
Cu2+ substituted Aquifex aeolicus KDO8PS in complex with KDO8P
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

Chemicals

ChemComp-PO4:
PHOSPHATE ION

ChemComp-CD:
Unknown entry

ChemComp-PEP:
PHOSPHOENOLPYRUVATE

ChemComp-HOH:
WATER

ChemComp-A5P:
ARABINOSE-5-PHOSPHATE

ChemComp-ZN:
Unknown entry

ChemComp-CU:
COPPER (II) ION

ChemComp-KD0:
3-deoxy-8-O-phosphono-D-manno-oct-2-ulosonic acid

ChemComp-ACT:
ACETATE ION

Source
  • aquifex aeolicus (bacteria)
KeywordsLYASE / kdo8ps / kdo8p / kdo / PEP / A5P / beta/alpha barrel / TRANSFERASE / Zn2+ / Copper / metal geometry / cytoplasm / Lipopolysaccharide biosynthesis

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