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Structure paper

TitleMapping the ribonucleolytic active site of bovine seminal ribonuclease. The binding of pyrimidinyl phosphonucleotide inhibitors
Journal, issue, pagesEur. J. Med. Chem., Vol. 44, Page 4496-4508, Year 2009
Publish dateJun 24, 2008 (structure data deposition date)
AuthorsDossi, K. / Tsirkone, V.G. / Hayes, J.M. / Matousek, J. / Pouckova, P. / Soucek, J. / Zadinova, M. / Zographos, S.E. / Leonidas, D.D.
External linksEur. J. Med. Chem. / PubMed:19643512
MethodsX-ray diffraction
Resolution1.53 - 1.69 Å
Structure data

PDB-3djo:
Bovine Seminal Ribonuclease uridine 2' phosphate complex
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-3djp:
Bovine Seminal Ribonuclease- Uridine 3' phosphate complex
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-3djq:
Bovine Seminal Ribonuclease- Uridine 5' diphosphate complex
Method: X-RAY DIFFRACTION / Resolution: 1.53 Å

PDB-3djv:
Bovine Seminal Ribonuclease- cytidine 3' phosphate complex
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-3djx:
Bovine Seminal Ribonuclease- cytidine 5' phosphate complex
Method: X-RAY DIFFRACTION / Resolution: 1.69 Å

Chemicals

ChemComp-U2P:
PHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL]

ChemComp-ACT:
ACETATE ION

ChemComp-HOH:
WATER

ChemComp-UA3:
URACIL ARABINOSE-3'-PHOSPHATE

ChemComp-UDP:
URIDINE-5'-DIPHOSPHATE / UDP*YM

ChemComp-C3P:
CYTIDINE-3'-MONOPHOSPHATE

ChemComp-C5P:
CYTIDINE-5'-MONOPHOSPHATE

Source
  • bos taurus (cattle)
KeywordsHYDROLASE / Ribonuclease / Allosteric enzyme / Endonuclease / Nuclease / Secreted

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