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TitleCrystal Structure of the Peroxisome Proliferator-Activated Receptor gamma (PPARgamma) Ligand Binding Domain Complexed with a Novel Partial Agonist: A New Region of the Hydrophobic Pocket Could Be Exploited for Drug Design
Journal, issue, pagesJ. Med. Chem., Vol. 51, Page 7768-7776, Year 2008
Publish dateOct 22, 2007 (structure data deposition date)
AuthorsMontanari, R. / Saccoccia, F. / Scotti, E. / Crestani, M. / Godio, C. / Gilardi, F. / Loiodice, F. / Fracchiolla, G. / Laghezza, A. / Tortorella, P. ...Montanari, R. / Saccoccia, F. / Scotti, E. / Crestani, M. / Godio, C. / Gilardi, F. / Loiodice, F. / Fracchiolla, G. / Laghezza, A. / Tortorella, P. / Lavecchia, A. / Novellino, E. / Mazza, F. / Aschi, M. / Pochetti, G.
External linksJ. Med. Chem. / PubMed:19053776
MethodsX-ray diffraction
Resolution2.4 - 2.65 Å
Structure data

PDB-3b3k:
Crystal structure of the complex between PPARgamma and the full agonist LT175
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-3cds:
Crystal structure of the complex between PPAR-gamma and the agonist LT248 (clofibric acid analogue)
Method: X-RAY DIFFRACTION / Resolution: 2.65 Å

PDB-3d6d:
Crystal Structure of the complex between PPARgamma LBD and the LT175(R-enantiomer)
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

Chemicals

ChemComp-LRG:
(2S)-2-(biphenyl-4-yloxy)-3-phenylpropanoic acid

ChemComp-HOH:
WATER

ChemComp-GRR:
(2S)-2-(4-ethylphenoxy)-3-phenylpropanoic acid

Source
  • homo sapiens (human)
KeywordsTRANSCRIPTION / bundle of alpha-helices / small four-strnded beta-sheet / Activator / Alternative splicing / Diabetes mellitus / Disease mutation / DNA-binding / Metal-binding / Nucleus / Obesity / Phosphorylation / Polymorphism / Receptor / Transcription regulation / Zinc / Zinc-finger / bundle of alpha-helices and a small four-stranded beta-sheet / Phosphoprotein

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