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Structure paper

TitleA peroxide bridge between Fe and Cu ions in the O2 reduction site of fully oxidized cytochrome c oxidase could suppress the proton pump
Journal, issue, pagesProc. Natl. Acad. Sci. USA, Vol. 106, Page 2165-2169, Year 2009
Publish dateJan 8, 2009 (structure data deposition date)
AuthorsAoyama, H. / Muramoto, K. / Shinzawa-Itoh, K. / Hirata, K. / Yamashita, E. / Tsukihara, T. / Ogura, T. / Yoshikawa, S.
External linksProc. Natl. Acad. Sci. USA / PubMed:19164527
MethodsX-ray diffraction
Resolution1.95 - 2.5 Å
Structure data

PDB-2zxw:
Bovine heart cytochrome c oxidase at the fully oxidized state (1-s X-ray exposure dataset)
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-3abl:
Bovine heart cytochrome c oxidase at the fully oxidized state (15-s X-ray exposure dataset)
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-3abm:
Bovine heart cytochrome c oxidase at the fully oxidized state (200-s X-ray exposure dataset)
Method: X-RAY DIFFRACTION / Resolution: 1.95 Å

Chemicals

ChemComp-CU:
COPPER (II) ION

ChemComp-PER:
PEROXIDE ION

ChemComp-MG:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-HEA:
HEME-A

ChemComp-PGV:
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE / phospholipid*YM

ChemComp-CUA:
DINUCLEAR COPPER ION

ChemComp-TGL:
TRISTEAROYLGLYCEROL

ChemComp-PSC:
(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE / phospholipid*YM

ChemComp-CHD:
CHOLIC ACID

ChemComp-DMU:
DECYL-BETA-D-MALTOPYRANOSIDE / detergent*YM

ChemComp-UNX:
Unknown entry

ChemComp-PEK:
(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE / phospholipid*YM

ChemComp-CDL:
CARDIOLIPIN / phospholipid*YM

ChemComp-ZN:
Unknown entry

ChemComp-HOH:
WATER

Source
  • bos taurus (domestic cattle)
KeywordsOXIDOREDUCTASE / Electron transport / Formylation / Heme / Iron / Membrane / Metal-binding / Mitochondrion / Mitochondrion inner membrane / Respiratory chain / Transmembrane / Transport / Transit peptide / Copper / Acetylation / Zinc / Isopeptide bond / Ubl conjugation

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