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Structure paper

TitleCrystal Structures of Bacterial Peptidoglycan Amidase Ampd and an Unprecedented Activation Mechanism.
Journal, issue, pagesJ. Biol. Chem., Vol. 286, Page 31714-, Year 2011
Publish dateDec 14, 2010 (structure data deposition date)
AuthorsCarrasco-Lopez, C. / Rojas-Altuve, A. / Zhang, W. / Hesek, D. / Lee, M. / Barbe, S. / Andre, I. / Ferrer, P. / Silva-Martin, N. / Castro, G.R. ...Carrasco-Lopez, C. / Rojas-Altuve, A. / Zhang, W. / Hesek, D. / Lee, M. / Barbe, S. / Andre, I. / Ferrer, P. / Silva-Martin, N. / Castro, G.R. / Martinez-Ripoll, M. / Mobashery, S. / Hermoso, J.A.
External linksJ. Biol. Chem. / PubMed:21775432
MethodsX-ray diffraction
Resolution1.8 - 2 Å
Structure data

PDB-2y28:
crystal structure of Se-Met AmpD derivative
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-2y2b:
crystal structure of AmpD in complex with reaction products
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-2y2c:
crystal structure of AmpD Apoenzyme
Method: X-RAY DIFFRACTION / Resolution: 1.802 Å

PDB-2y2d:
crystal structure of AmpD holoenzyme
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-2y2e:
crystal structure of AmpD grown at pH 5.5
Method: X-RAY DIFFRACTION / Resolution: 2 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-AH0:
2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID

ChemComp-MHI:
L-ALA-GAMMA-D-GLU-MESO-DIAMINOPIMELIC ACID

Source
  • citrobacter freundii (bacteria)
KeywordsHYDROLASE / PEPTIDOGLYCAN AMIDASE / AMIDASE_2 FAMILY / ACTIVATION MECHANISM

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