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TitleCrystal Structure of a Complex between the Actinomadura R39 Dd-Peptidase and a Peptidoglycan- Mimetic Boronate Inhibitor: Interpretation of a Transition State Analogue in Terms of Catalytic Mechanism.
Journal, issue, pagesBiochemistry, Vol. 49, Page 6411-, Year 2010
Publish dateMay 4, 2010 (structure data deposition date)
AuthorsDzhekieva, L. / Rocaboy, M. / Kerff, F. / Charlier, P. / Sauvage, E. / Pratt, R.F.
External linksBiochemistry / PubMed:20608745
MethodsX-ray diffraction
Resolution2.4 Å
Structure data

PDB-2xdm:
Crystal structure of a complex between Actinomadura R39 DD peptidase and a peptidoglycan mimetic boronate inhibitor
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

Chemicals

ChemComp-SO4:
SULFATE ION

ChemComp-CO:
Unknown entry

ChemComp-BO8:
(D-ALPHA-AMINOPIMELYLAMINO)-D-1-ETHYLBORONIC ACID

ChemComp-MES:
2-(N-MORPHOLINO)-ETHANESULFONIC ACID / pH buffer*YM

ChemComp-HOH:
WATER

Source
  • actinomadura (bacteria)
KeywordsHYDROLASE/INHIBITOR / HYDROLASE-INHIBITOR COMPLEX / BORONIC ACID / PEPTIDOGLYCAN / HYDROLASE

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