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TitleLigand-induced conformational changes in the capping subdomain of a bacterial old yellow enzyme homologue and conserved sequence fingerprints provide new insights into substrate binding.
Journal, issue, pagesJ. Biol. Chem., Vol. 281, Page 28152-28161, Year 2006
Publish dateApr 14, 2006 (structure data deposition date)
Authorsvan den Hemel, D. / Brige, A. / Savvides, S.N. / Van Beeumen, J.
External linksJ. Biol. Chem. / PubMed:16857682
MethodsX-ray diffraction
Resolution1.4 - 1.7 Å
Structure data

PDB-2gou:
Structure of wild type, oxidized SYE1, an OYE homologue from S. oneidensis
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-2gq8:
Structure of SYE1, an OYE homologue from S. ondeidensis, in complex with p-hydroxyacetophenone
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-2gq9:
Structure of SYE1, an OYE homologue from S. oneidensis, in complex with p-hydroxybenzaldehyde
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-2gqa:
Structure of NADH-reduced SYE1, an OYE homologue from S. oneidensis
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

Chemicals

ChemComp-BOG:
octyl beta-D-glucopyranoside / detergent*YM

ChemComp-SO4:
SULFATE ION

ChemComp-FMN:
FLAVIN MONONUCLEOTIDE

ChemComp-PE4:
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL / precipitant*YM

ChemComp-TRS:
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM

ChemComp-HOH:
WATER

ChemComp-AC6:
P-HYDROXYACETOPHENONE

ChemComp-HBA:
P-HYDROXYBENZALDEHYDE

Source
  • shewanella oneidensis (bacteria)
KeywordsOXIDOREDUCTASE / old yeallow enzyme / flavoenzyme / FMN / old yellow enzyme / phenolic ligands / reduction by NADH

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