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Structure paper

TitleThermodynamic and structural basis for transition-state stabilization in antibody-catalyzed hydrolysis
Journal, issue, pagesJ. Mol. Biol., Vol. 369, Page 198-209, Year 2007
Publish dateMay 30, 2006 (structure data deposition date)
AuthorsOda, M. / Ito, N. / Tsumuraya, T. / Suzuki, K. / Sakakura, M. / Fujii, I.
External linksJ. Mol. Biol. / PubMed:17428500
MethodsX-ray diffraction
Resolution1.7 - 2.25 Å
Structure data

PDB-2dqt:
High resolution crystal structure of the complex of the hydrolytic antibody Fab 6D9 and a transition-state analog
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-2dqu:
Crystal form II: high resolution crystal structure of the complex of the hydrolytic antibody Fab 6D9 and a transition-state analog
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-2dtm:
Thermodynamic and structural analyses of hydrolytic mechanism by catalytic antibodies
Method: X-RAY DIFFRACTION / Resolution: 2.25 Å

Chemicals

ChemComp-CPD:
[1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER

ChemComp-HOH:
WATER

Source
  • mus musculus (house mouse)
KeywordsIMMUNE SYSTEM / CATALYTIC ANTIBODY / ESTER HYDROLYSIS / ESTEROLYTIC / FAB / IMMUNOGLOBULIN

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