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Structure paper

TitleThe structure of an enzyme-product complex reveals the critical role of a terminal hydroxide nucleophile in the bacterial phosphotriesterase mechanism
Journal, issue, pagesBiochim. Biophys. Acta, Vol. 1752, Page 56-64, Year 2005
Publish dateSep 8, 2005 (structure data deposition date)
AuthorsJackson, C. / Kim, H.K. / Carr, P.D. / Liu, J.W. / Ollis, D.L.
External linksBiochim. Biophys. Acta / PubMed:16054447
MethodsX-ray diffraction
Resolution1.75 - 1.85 Å
Structure data

PDB-2d2g:
OpdA from Agrobacterium radiobacter with bound product dimethylthiophosphate
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-2d2h:
OpdA from Agrobacterium radiobacter with bound inhibitor trimethyl phosphate at 1.8 A resolution
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-2d2j:
OpdA from Agrobacterium radiobacter without inhibitor/product present at 1.75 A resolution
Method: X-RAY DIFFRACTION / Resolution: 1.75 Å

Chemicals

ChemComp-CO:
Unknown entry

ChemComp-DZZ:
O,O-DIMETHYL HYDROGEN THIOPHOSPHATE

ChemComp-HOH:
WATER

ChemComp-TZZ:
TRIMETHYL PHOSPHATE

ChemComp-EDO:
1,2-ETHANEDIOL

Source
  • agrobacterium tumefaciens (bacteria)
KeywordsHYDROLASE / phosphotriesterase / opda / metalloenzyme

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