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TitleThe Reaction Mechanism of Phospholipase D from Streptomyces Sp. Strain Pmf. Snapshots Along the Reaction Pathway Reveal a Pentacoordinate Reaction Intermediate and an Unexpected Final Product
Journal, issue, pagesJ. Mol. Biol., Vol. 339, Page 805-, Year 2004
Publish dateApr 1, 2004 (structure data deposition date)
AuthorsLeiros, I. / Mcsweeney, S. / Hough, E.
External linksJ. Mol. Biol. / PubMed:15165852
MethodsX-ray diffraction
Resolution1.35 - 1.75 Å
Structure data

PDB-1v0r:
Tungstate-inhibited phospholipase D from Streptomyces sp. strain PMF
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-1v0s:
Uninhibited form of Phospholipase D from Streptomyces sp. strain PMF
Method: X-RAY DIFFRACTION / Resolution: 1.75 Å

PDB-1v0t:
Phospholipase D from Streptomyces sp. strain PMF soaked with the product glycerophosphate
Method: X-RAY DIFFRACTION / Resolution: 1.53 Å

PDB-1v0u:
Phospholipase D from Streptomyces sp. strain PMF soaked with the product glycerophosphate.
Method: X-RAY DIFFRACTION / Resolution: 1.42 Å

PDB-1v0v:
Phospholipase D from Streptomyces sp. strain PMF soaked with the substrate dibutyrylphosphatidylcholine.
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-1v0w:
Phospholipase D from Streptomyces sp. strain PMF soaked with the substrate dibutyrylphosphatidylcholine.
Method: X-RAY DIFFRACTION / Resolution: 1.35 Å

PDB-1v0y:
Phospholipase D from Streptomyces sp. strain PMF soaked with the substrate dibutyrylphosphatidylcholine.
Method: X-RAY DIFFRACTION / Resolution: 1.71 Å

Chemicals

ChemComp-WO5:
TUNGSTATE(VI) ION

ChemComp-HOH:
WATER

ChemComp-PO3:
PHOSPHITE ION

ChemComp-HI5:
2-(BUTYRYLOXY)-1-{[(TETRAHYDROXYPHOSPHORANYL)OXY]METHYL}ETHYL BUTYRATE

Source
  • streptomyces sp. (bacteria)
KeywordsHYDROLASE / PHOSPHOLIPASE D / TUNGSTATE-INHIBITED / UNINHIBITED / PRODUCT SOAK / GLYCEROPHOSPHATE / SUBSTRATE SOAK / DIBUTYRYLPHOSPHATIDYLCHOLINE / DIC4PC

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