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Structure paper

TitleStructural basis for different types of hetero-tetrameric light-harvesting complexes in a diatom PSII-FCPII supercomplex
Journal, issue, pagesNat Commun, Vol. 13, Page 1764, Year 2022
Publish dateSep 6, 2021 (structure data deposition date)
AuthorsNagao R / Kato K / Kumazawa M / Ifuku K / Yokono M / Suzuki T / Dohmae N / Akita F / Akimoto S / Miyazaki N / Shen JR
External linksNat Commun / Search PubMed
MethodsEM (single particle)
Resolution2.5 - 2.8 Å
Structure data

31905

7vd5

EMDB-31905, PDB-7vd5:
Structure of C2S2M2-type PSII-FCPII supercomplex from diatom
Method: EM (single particle) / Resolution: 2.5 Å

31906

7vd6

EMDB-31906, PDB-7vd6:
Structure of S1M1-type FCPII complex from diatom
Method: EM (single particle) / Resolution: 2.8 Å

Chemicals

ChemComp-OEX:
CA-MN4-O5 CLUSTER

ChemComp-FE2:
Unknown entry

ChemComp-CLA:
CHLOROPHYLL A

ChemComp-PHO:
PHEOPHYTIN A

ChemComp-BCR:
BETA-CAROTENE

ChemComp-SQD:
1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL

ChemComp-LMG:
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE

ChemComp-BCT:
BICARBONATE ION / pH buffer*YM

ChemComp-LHG:
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE / phospholipid*YM

ChemComp-DGD:
DIGALACTOSYL DIACYL GLYCEROL (DGDG)

ChemComp-PL9:
2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE

ChemComp-HEM:
PROTOPORPHYRIN IX CONTAINING FE

ChemComp-KC1:
Chlorophyll c1

ChemComp-A86:
(3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'-


ChemComp, No image

ChemComp-UNL:
Unknown ligand

ChemComp-DD6:
(3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol

ChemComp-LMU:
DODECYL-ALPHA-D-MALTOSIDE / detergent*YM

ChemComp-HOH:
WATER

Source
  • chaetoceros gracilis (Diatom)
KeywordsELECTRON TRANSPORT / Photosystem / PSII

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