Database of articles cited by EMDB/PDB/SASBDB data

Keywords
Structure methods	All X-ray diffraction NMR electron microscopy small angle scattering neutron diffraction fiber diffraction powder diffraction infrared spectroscopy EPR fluorescence transfer theoretical model Hybrid
Author
Journal
IF	>30 >20 >10 >5 all

Title	Visualizing the DNA repair process by a photolyase at atomic resolution.
Journal, issue, pages	Science, Vol. 382, Page eadd7795-eadd7795, Year 2023
Publish date	Jul 1, 2022 (structure data deposition date)
Authors	Maestre-Reyna, M. / Wang, P.H. / Nango, E. / Hosokawa, Y. / Saft, M. / Furrer, A. / Yang, C.H. / Gusti Ngurah Putu, E.P. / Wu, W.J. / Emmerich, H.J. ...Maestre-Reyna, M. / Wang, P.H. / Nango, E. / Hosokawa, Y. / Saft, M. / Furrer, A. / Yang, C.H. / Gusti Ngurah Putu, E.P. / Wu, W.J. / Emmerich, H.J. / Caramello, N. / Franz-Badur, S. / Yang, C. / Engilberge, S. / Wranik, M. / Glover, H.L. / Weinert, T. / Wu, H.Y. / Lee, C.C. / Huang, W.C. / Huang, K.F. / Chang, Y.K. / Liao, J.H. / Weng, J.H. / Gad, W. / Chang, C.W. / Pang, A.H. / Yang, K.C. / Lin, W.T. / Chang, Y.C. / Gashi, D. / Beale, E. / Ozerov, D. / Nass, K. / Knopp, G. / Johnson, P.J.M. / Cirelli, C. / Milne, C. / Bacellar, C. / Sugahara, M. / Owada, S. / Joti, Y. / Yamashita, A. / Tanaka, R. / Tanaka, T. / Luo, F. / Tono, K. / Zarzycka, W. / Muller, P. / Alahmad, M.A. / Bezold, F. / Fuchs, V. / Gnau, P. / Kiontke, S. / Korf, L. / Reithofer, V. / Rosner, C.J. / Seiler, E.M. / Watad, M. / Werel, L. / Spadaccini, R. / Yamamoto, J. / Iwata, S. / Zhong, D. / Standfuss, J. / Royant, A. / Bessho, Y. / Essen, L.O. / Tsai, M.D.
External links	Science / PubMed:38033054
Methods	X-ray diffraction
Resolution	1.95 - 2.75 Å
Structure data	PDB-7yc7: Dark, fully reduced structure of the MmCPDII-DNA complex as produced at SwissFEL Method: X-RAY DIFFRACTION / Resolution: 1.95 Å PDB-7ycm: TR-SFX MmCPDII-DNA complex: 100 ps snapshot. Includes 100ps, dark, and extrapolated structure factors Method: X-RAY DIFFRACTION / Resolution: 2.0 Å PDB-7ycp: TR-SFX MmCPDII-DNA complex: 250 ps snapshot. Includes 250 ps, dark, and extrapolated structure factors Method: X-RAY DIFFRACTION / Resolution: 2.08 Å PDB-7ycr: TR-SFX MmCPDII-DNA complex: 450 ps snapshot. Includes 450ps, dark, and extrapolated structure factors Method: X-RAY DIFFRACTION / Resolution: 2.15 Å PDB-7yd6: TR-SFX MmCPDII-DNA complex: 650 ps snapshot. Includes 650ps, dark, and extrapolated structure factors Method: X-RAY DIFFRACTION / Resolution: 2.15 Å PDB-7yd7: TR-SFX MmCPDII-DNA complex: 1 ns snapshot. Includes 1 ns, dark, and extrapolated structure factors Method: X-RAY DIFFRACTION / Resolution: 2.25 Å PDB-7yd8: TR-SFX MmCPDII-DNA complex: 2 ns snapshot. Includes 2 ns, dark, and extrapolated structure factors Method: X-RAY DIFFRACTION / Resolution: 2.15 Å PDB-7ydz: TR-SFX MmCPDII-DNA complex: dark state as collected in SACLA Method: X-RAY DIFFRACTION / Resolution: 2.23 Å PDB-7ye0: DF-SFX MmCPDII-DNA complex: steady state oxidized complex Method: X-RAY DIFFRACTION / Resolution: 2.75 Å PDB-7yeb: TR-SFX MmCPDII-DNA complex: 3.35 ns snapshot. Includes 3.35 ns, dark, and extrapolated structure factors Method: X-RAY DIFFRACTION / Resolution: 2.2 Å PDB-7yec: TR-SFX MmCPDII-DNA complex: 6 ns snapshot. Includes 6 ns, dark, and extrapolated structure factors Method: X-RAY DIFFRACTION / Resolution: 2.2 Å PDB-7yee: TR-SFX MmCPDII-DNA complex: 10 ns snapshot. Includes 10 ns, dark, and extrapolated structure factors. Collected at SwissFEL Method: X-RAY DIFFRACTION / Resolution: 2.15 Å PDB-7yei: TR-SFX MmCPDII-DNA complex: 10 ns time-point collected in SACLA. Includes 10 ns, dark, and extrapolated structure factors Method: X-RAY DIFFRACTION / Resolution: 2.7 Å PDB-7yej: TR-SFX MmCPDII-DNA complex: 100 ns time-point collected in SACLA. Includes 100 ns, dark, and extrapolated structure factors Method: X-RAY DIFFRACTION / Resolution: 2.55 Å PDB-7yek: TR-SFX MmCPDII-DNA complex: 500 ns time-point collected in SACLA. Includes 500 ns, dark, and extrapolated structure factors Method: X-RAY DIFFRACTION / Resolution: 2.4 Å PDB-7yel: TR-SFX MmCPDII-DNA complex: 25 us time-point collected in SACLA. Includes 25 us, dark, and extrapolated structure factors Method: X-RAY DIFFRACTION / Resolution: 2.5 Å PDB-7yem: TR-SFX MmCPDII-DNA complex: 200 us time-point collected in SACLA. Includes 200 us, dark, and extrapolated structure factors Method: X-RAY DIFFRACTION / Resolution: 2.6 Å PDB-8kcm: MmCPDII-DNA complex containing low-dosage, light induced repaired DNA. Method: X-RAY DIFFRACTION / Resolution: 2.5 Å
Chemicals	ChemComp-FAD: FLAVIN-ADENINE DINUCLEOTIDE / FADYM ChemComp-SO4: SULFATE ION ChemComp-HOH: WATER ChemComp-GOL*: GLYCEROL
Source	methanosarcina mazei (archaea) synthetic construct (others)
Keywords	DNA BINDING PROTEIN / Flavoprotein / photolyase / light driven electron transfer / DNA repair / time-resolved serial crystallography. / time-resolved serial crystallography