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Structure paper

TitleRu-Based CO releasing molecules with azole ligands: interaction with proteins and the CO release mechanism disclosed by X-ray crystallography.
Journal, issue, pagesDalton Trans, Vol. 46, Page 9621-9629, Year 2017
Publish dateJun 26, 2017 (structure data deposition date)
AuthorsPontillo, N. / Ferraro, G. / Messori, L. / Tamasi, G. / Merlino, A.
External linksDalton Trans / PubMed:28702564
MethodsX-ray diffraction
Resolution1.82 - 2.38 Å
Structure data

PDB-5ob6:
X-ray structure of the adduct formed upon reaction of lysozyme with the compound fac-[RuII(CO)3Cl2(N3-IM), IM=imidazole
Method: X-RAY DIFFRACTION / Resolution: 1.88 Å

PDB-5ob7:
X-ray structure of the adduct formed upon reaction of lysozyme with the compound fac-[RuII(CO)3Cl2(N3-IM), IM=imidazole (crystal 2)
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-5ob8:
X-ray structure of the adduct formed upon reaction of lysozyme with the compound fac-[RuII(CO)3Cl2(N3-MIM), MIM=methyl-imidazole (crystals grown using NaCl)
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-5ob9:
X-ray structure of the adduct formed upon reaction of lysozyme with the compound fac-[RuII(CO)3Cl2(N3-MIM), MIM=methyl-imidazole (crystals grown using ethylene glycol
Method: X-RAY DIFFRACTION / Resolution: 2.38 Å

PDB-5obc:
X-ray structure of the adduct formed upon reaction of ribonuclease A with the compound fac-[RuII(CO)3Cl2(N3-IM), IM=imidazole
Method: X-RAY DIFFRACTION / Resolution: 2.07 Å

PDB-5obd:
X-ray structure of the adduct formed upon reaction of ribonuclease A with the compound fac-[RuII(CO)3Cl2(N3-MIM), MIM=methyl-imidazole
Method: X-RAY DIFFRACTION / Resolution: 1.98 Å

PDB-5obe:
X-ray structure of the adduct formed upon reaction of ribonuclease A with the compound fac-[RuII(CO)3Cl2(N3-MBI), MBI=methyl-benzimidazole
Method: X-RAY DIFFRACTION / Resolution: 1.82 Å

Chemicals

ChemComp-GOL:
GLYCEROL

ChemComp-CL:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-9Q8:
tris(oxidaniumylidynemethyl)-tris(oxidanyl)ruthenium

ChemComp-RU2:
pentakis(oxidaniumyl)-(oxidaniumylidynemethyl)ruthenium

ChemComp-RU1:
bis(oxidaniumylidynemethyl)ruthenium(2+)

ChemComp-HOH:
WATER

ChemComp-9QB:
chloranyl-bis(oxidaniumyl)-tris(oxidaniumylidynemethyl)ruthenium

ChemComp-RU:
RUTHENIUM ION

ChemComp-ACT:
ACETATE ION

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-NO3:
NITRATE ION

ChemComp-PO4:
PHOSPHATE ION

Source
  • gallus gallus (chicken)
  • bos taurus (cattle)
KeywordsHYDROLASE / protein-metallodrug interaction / CO releasing molecules

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