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TitleIdentification of novel scaffolds for potential anti-Helicobacter pylori agents based on the crystal structure of H. pylori 3-deoxy-d-manno-octulosonate 8-phosphate synthase (HpKDO8PS).
Journal, issue, pagesEur. J. Med. Chem., Vol. 108, Page 188-202, Year 2016
Publish dateMar 27, 2015 (structure data deposition date)
AuthorsCho, S. / Im, H. / Lee, K.Y. / Chen, J. / Kang, H.J. / Yoon, H.J. / Min, K.H. / Lee, K.R. / Park, H.J. / Lee, B.J.
External linksEur. J. Med. Chem. / PubMed:26649906
MethodsX-ray diffraction
Resolution1.65 - 2.4 Å
Structure data

PDB-4z1a:
Structure of apo form KDO8PS from H.pylori
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-4z1b:
Structure of H204A mutant KDO8PS from H.pylori
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-4z1c:
Structure of Cadmium bound KDO8PS from H.pylori
Method: X-RAY DIFFRACTION / Resolution: 1.93 Å

PDB-4z1d:
Structure of PEP and zinc bound KDO8PS from H.pylori
Method: X-RAY DIFFRACTION / Resolution: 1.65 Å

Chemicals

ChemComp-HOH:
WATER

ChemComp-CD:
Unknown entry

ChemComp-PEP:
PHOSPHOENOLPYRUVATE

ChemComp-ZN:
Unknown entry

Source
  • helicobacter pylori (strain atcc 700392 / 26695) (bacteria)
KeywordsTRANSFERASE / Helicobacter pylori / lipopolysaccharide biosynthesis / apo / mutant / metal bound / ligand bound

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