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Structure paper

TitleVisualizing breathing motion of internal cavities in concert with ligand migration in myoglobin
Journal, issue, pagesProc. Natl. Acad. Sci. USA, Vol. 106, Page 2612-2616, Year 2009
Publish dateSep 17, 2008 (structure data deposition date)
AuthorsTomita, A. / Sato, T. / Ichiyanagi, K. / Nozawa, S. / Ichikawa, H. / Chollet, M. / Kawai, F. / Park, S.-Y. / Tsuduki, T. / Yamato, T. ...Tomita, A. / Sato, T. / Ichiyanagi, K. / Nozawa, S. / Ichikawa, H. / Chollet, M. / Kawai, F. / Park, S.-Y. / Tsuduki, T. / Yamato, T. / Koshihara, S.Y. / Adachi, S.
External linksProc. Natl. Acad. Sci. USA / PubMed:19204297
MethodsX-ray diffraction
Resolution1.21 - 1.22 Å
Structure data

PDB-2zsn:
Carbonmonoxy Sperm Whale Myoglobin at 100 K: Laser on [300 min]
Method: X-RAY DIFFRACTION / Resolution: 1.21 Å

PDB-2zso:
Carbonmonoxy Sperm Whale Myoglobin at 100 K: Laser on [450 min]
Method: X-RAY DIFFRACTION / Resolution: 1.21 Å

PDB-2zsp:
Carbonmonoxy Sperm Whale Myoglobin at 120 K: Laser on [300 min]
Method: X-RAY DIFFRACTION / Resolution: 1.21 Å

PDB-2zsq:
Carbonmonoxy Sperm Whale Myoglobin at 140 K: Laser on [150 min]
Method: X-RAY DIFFRACTION / Resolution: 1.21 Å

PDB-2zsr:
Carbonmonoxy Sperm Whale Myoglobin at 120 K: Laser on [450 min]
Method: X-RAY DIFFRACTION / Resolution: 1.21 Å

PDB-2zss:
Carbonmonoxy Sperm Whale Myoglobin at 140 K: Laser on [300 min]
Method: X-RAY DIFFRACTION / Resolution: 1.21 Å

PDB-2zst:
Carbonmonoxy Sperm Whale Myoglobin at 140 K: Laser on [450 min]
Method: X-RAY DIFFRACTION / Resolution: 1.21 Å

PDB-2zsx:
Carbonmonoxy Sperm Whale Myoglobin at 140 K: Laser on [600 min]
Method: X-RAY DIFFRACTION / Resolution: 1.21 Å

PDB-2zsy:
Carbonmonoxy Sperm Whale Myoglobin at 140 K: Laser on [750 min]
Method: X-RAY DIFFRACTION / Resolution: 1.21 Å

PDB-2zsz:
Carbonmonoxy Sperm Whale Myoglobin at 100 K: Laser on [600 min]
Method: X-RAY DIFFRACTION / Resolution: 1.21 Å

PDB-2zt0:
Carbonmonoxy Sperm Whale Myoglobin at 100 K: Laser on [750 min]
Method: X-RAY DIFFRACTION / Resolution: 1.21 Å

PDB-2zt1:
Carbonmonoxy Sperm Whale Myoglobin at 100 K: Laser on [810 min]
Method: X-RAY DIFFRACTION / Resolution: 1.21 Å

PDB-2zt2:
Carbonmonoxy Sperm Whale Myoglobin at 120 K: Laser on [600 min]
Method: X-RAY DIFFRACTION / Resolution: 1.21 Å

PDB-2zt3:
Carbonmonoxy Sperm Whale Myoglobin at 120 K: Laser on [750 min]
Method: X-RAY DIFFRACTION / Resolution: 1.21 Å

PDB-2zt4:
Carbonmonoxy Sperm Whale Myoglobin at 120 K: Laser on [810 min]
Method: X-RAY DIFFRACTION / Resolution: 1.21 Å

PDB-3e4n:
Carbonmonoxy Sperm Whale Myoglobin at 40 K: Laser off
Method: X-RAY DIFFRACTION / Resolution: 1.21 Å

PDB-3e55:
Carbonmonoxy Sperm Whale Myoglobin at 100 K: Laser off
Method: X-RAY DIFFRACTION / Resolution: 1.21 Å

PDB-3e5i:
Carbonmonoxy Sperm Whale Myoglobin at 120 K: Laser off
Method: X-RAY DIFFRACTION / Resolution: 1.22 Å

PDB-3e5o:
Carbonmonoxy Sperm Whale Myoglobin at 140 K: Laser off
Method: X-RAY DIFFRACTION / Resolution: 1.21 Å

PDB-3ecl:
Carbonmonoxy Sperm Whale Myoglobin at 40 K: Laser on
Method: X-RAY DIFFRACTION / Resolution: 1.21 Å

PDB-3ecx:
Carbonmonoxy Sperm Whale Myoglobin at 100 K: Laser on [30 min]
Method: X-RAY DIFFRACTION / Resolution: 1.21 Å

PDB-3ecz:
Carbonmonoxy Sperm Whale Myoglobin at 120 K: Laser on [30 min]
Method: X-RAY DIFFRACTION / Resolution: 1.21 Å

PDB-3ed9:
Carbonmonoxy Sperm Whale Myoglobin at 140 K: Laser on [30 min]
Method: X-RAY DIFFRACTION / Resolution: 1.21 Å

PDB-3eda:
Carbonmonoxy Sperm Whale Myoglobin at 100 K: Laser on [150 min]
Method: X-RAY DIFFRACTION / Resolution: 1.21 Å

PDB-3edb:
Carbonmonoxy Sperm Whale Myoglobin at 120 K: Laser on [150 min]
Method: X-RAY DIFFRACTION / Resolution: 1.21 Å

Chemicals

ChemComp-SO4:
SULFATE ION

ChemComp-HEM:
PROTOPORPHYRIN IX CONTAINING FE

ChemComp-CMO:
CARBON MONOXIDE

ChemComp-HOH:
WATER

Source
  • physeter catodon (sperm whale)
KeywordsOXYGEN TRANSPORT / haem protein / myoglobin / ligand migration / photodissociation / Heme / Iron / Metal-binding / Muscle protein / Transport

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