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Structure paper

TitleImmune memory shapes human polyclonal antibody responses to H2N2 vaccination.
Journal, issue, pagesbioRxiv, Year 2023
Publish dateAug 24, 2023
AuthorsYuhe R Yang / Julianna Han / Hailee R Perrett / Sara T Richey / Abigail M Jackson / Alesandra J Rodriguez / Rebecca A Gillespie / Sarah O'Connell / Julie E Raab / Lauren Y Cominsky / Ankita Chopde / Masaru Kanekiyo / Katherine V Houser / Grace L Chen / Adrian B McDermott / Sarah F Andrews / Andrew B Ward /
PubMed AbstractInfluenza A virus subtype H2N2, which caused the 1957 influenza pandemic, remains a global threat. A recent phase I clinical trial investigating a ferritin nanoparticle displaying H2 hemagglutinin in ...Influenza A virus subtype H2N2, which caused the 1957 influenza pandemic, remains a global threat. A recent phase I clinical trial investigating a ferritin nanoparticle displaying H2 hemagglutinin in H2-naïve and H2-exposed adults. Therefore, we could perform comprehensive structural and biochemical characterization of immune memory on the breadth and diversity of the polyclonal serum antibody response elicited after H2 vaccination. We temporally map the epitopes targeted by serum antibodies after first and second vaccinations and show previous H2 exposure results in higher responses to the variable head domain of hemagglutinin while initial responses in H2-naïve participants are dominated by antibodies targeting conserved epitopes. We use cryo-EM and monoclonal B cell isolation to describe the molecular details of cross-reactive antibodies targeting conserved epitopes on the hemagglutinin head including the receptor binding site and a new site of vulnerability deemed the medial junction. Our findings accentuate the impact of pre-existing influenza exposure on serum antibody responses.
External linksbioRxiv / PubMed:37781590 / PubMed Central
MethodsEM (single particle)
Resolution2.8 - 22.8 Å
Structure data

EMDB-41464, PDB-8tp2:
H2 hemagglutinin (A/Singapore/1/1957) in complex with RBS-targeting 1-1-1F05
Method: EM (single particle) / Resolution: 3.1 Å

EMDB-41465, PDB-8tp3:
H1 hemagglutinin (NC99) in complex with RBS-targeting Fab 1-1-1F05
Method: EM (single particle) / Resolution: 3.6 Å

EMDB-41466, PDB-8tp4:
H2 hemagglutinin (A/Singapore/1/1957) in complex with RBS-targeting Fab 1-1-1E04
Method: EM (single particle) / Resolution: 3.3 Å

EMDB-41467, PDB-8tp5:
H1 hemagglutinin (NC99) in complex with RBS-targeting Fab 1-1-1E04
Method: EM (single particle) / Resolution: 2.9 Å

EMDB-41468, PDB-8tp6:
H2 hemagglutinin (A/Singapore/1/1957) in complex with RBS-targeting Fab 4-1-1E02
Method: EM (single particle) / Resolution: 3.1 Å

EMDB-41469, PDB-8tp7:
H2 hemagglutinin (A/Singapore/1/1957) in complex with Sa-targeting Fab 4-1-1G03
Method: EM (single particle) / Resolution: 2.8 Å

EMDB-41470, PDB-8tp9:
H2 hemagglutinin (A/Singapore/1/1957) in complex with medial-junction-targeting Fab 2-2-1G06
Method: EM (single particle) / Resolution: 3.1 Å

EMDB-41471, PDB-8tpa:
H1 hemagglutinin (NC99) in complex with medial-junction-targeting Fab 2-2-1G06
Method: EM (single particle) / Resolution: 3.0 Å

EMDB-41472: H2 hemagglutinin (A/Singapore/1/1957) in complex with polyclonal Fab, pAb_1
Method: EM (single particle) / Resolution: 2.9 Å

EMDB-41473: H2 hemagglutinin (A/Singapore/1/1957) in complex with polyclonal Fab, pAb_2
Method: EM (single particle) / Resolution: 2.8 Å

EMDB-41474: H2 hemagglutinin (A/Singapore/1/1957) in complex with polyclonal Fab, pAb_3
Method: EM (single particle) / Resolution: 6.1 Å

EMDB-41523: Polyclonal immune complex of Fab binding the H2 HA from serum of subject 2-1 at week 4
Method: EM (single particle) / Resolution: 22.8 Å

EMDB-41524: Polyclonal immune complex of Fab binding the H2 HA from serum of subject 2-1 at week 16
Method: EM (single particle) / Resolution: 20.0 Å

EMDB-41525: Polyclonal immune complex of Fab binding the H2 HA from serum of subject 2-1 at week 20
Method: EM (single particle) / Resolution: 20.0 Å

EMDB-41526: Polyclonal immune complex of Fab binding the H2 HA from serum of subject 2-2 at week 0
Method: EM (single particle) / Resolution: 20.0 Å

EMDB-41527: Polyclonal immune complex of Fab binding the H2 HA from serum of subject 2-2 at week 4
Method: EM (single particle) / Resolution: 20.0 Å

EMDB-41528: Polyclonal immune complex of Fab binding the H2 HA from serum of subject 2-2 week 16
Method: EM (single particle) / Resolution: 20.0 Å

EMDB-41529: Polyclonal immune complex of Fab binding to H2 HA from serum of subject 2-2 at week 20
Method: EM (single particle) / Resolution: 20.0 Å

EMDB-41530: Polyclonal immune complex of Fab binding the H2 HA from serum of subject 2-3 at week 4
Method: EM (single particle) / Resolution: 20.0 Å

EMDB-41531: Polyclonal immune complex of Fab binding H2 HA from serum of subject 2-3 at week 16
Method: EM (single particle) / Resolution: 20.0 Å

EMDB-41683: H2 HA in complex with Cb-targeting mAb 2-2-1E08
Method: EM (single particle) / Resolution: 20.0 Å

EMDB-41684: H2 HA in complex with esterase-targeting mAb 2-2-1C06
Method: EM (single particle) / Resolution: 20.0 Å

EMDB-41685: H2 HA in complex with RBS-targeting mAb 4-1-1E02
Method: EM (single particle) / Resolution: 20.0 Å

EMDB-41686: H2 HA in complex with Sa-targeting mAb 4-1-1G03
Method: EM (single particle) / Resolution: 20.0 Å

EMDB-41687: H2 HA in complex with Sa/Sb-targeting mAb 1-3-1F08
Method: EM (single particle) / Resolution: 20.0 Å

EMDB-41688: H2 HA in complex with RBS-targeting mAb 1-1-1F05
Method: EM (single particle) / Resolution: 20.0 Å

EMDB-41689: H2 HA in complex with Sa/Sb-targeting mAb 2-2-1F01
Method: EM (single particle) / Resolution: 20.0 Å

EMDB-41690: H2 HA in complex with medial-junction-targeting mAb 2-2-1G06
Method: EM (single particle) / Resolution: 20.0 Å

EMDB-41691: H2 HA in complex with RBS-targeting mAb 1-2-189-34
Method: EM (single particle) / Resolution: 20.0 Å

EMDB-41692: H2 HA in complex with RBS-targeting mAb 1-1-1A09
Method: EM (single particle) / Resolution: 20.0 Å

EMDB-41693: H2 HA in complex with RBS-targeting mAb 1-1-2A11
Method: EM (single particle) / Resolution: 20.0 Å

EMDB-41694: H2 HA in complex with Sb-targeting mAb 1-1-2E05
Method: EM (single particle) / Resolution: 20.0 Å

Chemicals

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

Source
  • influenza a virus (a/singapore/1/1957(h2n2))
  • homo sapiens (human)
  • influenza a virus (a/new caledonia/20/1999(h1n1))
KeywordsVIRAL PROTEIN/Immune System / influenza / hemagglutinin / monoclonal antibody / immune complex / VIRAL PROTEIN / VIRAL PROTEIN-Immune System complex

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