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Structure paper

TitleNeutron crystallography of the covalent intermediate of beta-glucosidase reveals remodeling of the catalytic center.
Journal, issue, pagesProc. Natl. Acad. Sci. USA, Year 2025
Publish dateJan 24, 2025 (structure data deposition date)
AuthorsYano, N. / Arakawa, H. / Lin, C.C. / Ishiwata, A. / Tanaka, K. / Kusaka, K. / Fushinobu, S.
External linksProc. Natl. Acad. Sci. USA / Search PubMed
MethodsX-ray diffraction / neutron diffraction
Resolution1.11 - 1.32 Å
Structure data

PDB-9lph:
Neutron structure of GH1 beta-glucosidase Td2F2 ligand-free form at room temperature
Method: X-RAY DIFFRACTION / NEUTRON DIFFRACTION / Resolution: 1.19 Å

PDB-9lpi:
Neutron structure of GH1 beta-glucosidase Td2F2 glucose complex at room temperature
Method: X-RAY DIFFRACTION / NEUTRON DIFFRACTION / Resolution: 1.2 Å

PDB-9lpv:
Neutron structure of GH1 beta-glucosidase Td2F2 2F-Glc complex at room temperature
Method: X-RAY DIFFRACTION / NEUTRON DIFFRACTION / Resolution: 1.32 Å

PDB-9lpx:
X-ray structure of GH1 beta-glucosidase Td2F2 2F-Glc complex at room temperature
Method: X-RAY DIFFRACTION / Resolution: 1.32 Å

PDB-9lpy:
X-ray structure of GH1 beta-glucosidase Td2F2 2F-Glc complex at cryogenic temperature
Method: X-RAY DIFFRACTION / Resolution: 1.11 Å

Chemicals

ChemComp-NHE:
2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID / pH buffer*YM

ChemComp-DOD:
DEUTERATED WATER

ChemComp-BGC:
beta-D-glucopyranose

ChemComp-G2F:
2-deoxy-2-fluoro-alpha-D-glucopyranose

ChemComp-HOH:
WATER

ChemComp-NA:
Unknown entry

ChemComp-GOL:
GLYCEROL

Source
  • metagenome (others)
KeywordsHYDROLASE / TIM BARREL / beta-glucosidase / Neutron / room-temperature / CRYOGENIC-TEMPERATURE

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