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Structure paper

TitleStructural basis for repurpose and design of nucleotide drugs for treating COVID-19
Journal, issue, pagesTo Be Published
Publish dateNov 8, 2020 (structure data deposition date)
AuthorsYin W / Luan X / Li Z / Xie Y / Zhou Z / Liu J / Gao M / Wang X / Zhou F / Wang Q ...Yin W / Luan X / Li Z / Xie Y / Zhou Z / Liu J / Gao M / Wang X / Zhou F / Wang Q / Shen D / Zhang Y / Tian G / Aisa H / Wei D / Jiang Y / Xiao G / Jiang H / Zhang L / Yu X / Shen J / Zhang S / Xu H
External linksSearch PubMed
MethodsEM (single particle)
Resolution2.6 - 2.97 Å
Structure data

30663

7dfg

EMDB-30663, PDB-7dfg:
Structure of COVID-19 RNA-dependent RNA polymerase bound to favipiravir
Method: EM (single particle) / Resolution: 2.7 Å

30664

7dfh

EMDB-30664, PDB-7dfh:
Structure of COVID-19 RNA-dependent RNA polymerase bound to ribavirin
Method: EM (single particle) / Resolution: 2.97 Å

30794

7doi

EMDB-30794, PDB-7doi:
Structure of COVID-19 RNA-dependent RNA polymerase bound to penciclovir.
Method: EM (single particle) / Resolution: 2.6 Å

30795

7dok

EMDB-30795, PDB-7dok:
Structure of COVID-19 RNA-dependent RNA polymerase (extended conformation) bound to penciclovir
Method: EM (single particle) / Resolution: 2.73 Å

Chemicals

ChemComp-1RP:
6-fluoro-3-oxo-4-(5-O-phosphono-beta-D-ribofuranosyl)-3,4-dihydropyrazine-2-carboxamide

ChemComp-ZN:
Unknown entry

ChemComp-POP:
PYROPHOSPHATE 2-

ChemComp-MG:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-RVP:
RIBAVIRIN MONOPHOSPHATE

ChemComp-HCU:
[(2R)-4-(2-azanyl-6-oxidanylidene-3H-purin-9-yl)-2-(hydroxymethyl)butyl] dihydrogen phosphate

Source
  • severe acute respiratory syndrome coronavirus 2
KeywordsVIRAL PROTEIN/RNA / COVID-19 / RNA polymerase / favipiravir binding / VIRAL PROTEIN / VIRAL PROTEIN-RNA complex / ribavirin binding / penciclovir binding / RNA polymerase in extended conformation

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